Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_N24
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 88 8e-19
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 83 3e-17
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 63 3e-11
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 51 1e-07
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 50 2e-07
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 29 0.50
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.2
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.5
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 1.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.0
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 27 2.0
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 27 2.7
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 26 4.7
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 25 6.2
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.2
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 8.2
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 88.2 bits (209), Expect = 8e-19
Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Frame = +3
Query: 159 SQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEAP----GPIN 326
+ +Q+AEF+EAF L D D+DG I N+L SLG+ + EL +M+ E G I+
Sbjct: 7 TDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTID 66
Query: 327 FTQLLGLFANRMSGGSDEDDVVINAFKTFDEEGK--IDSERLRHALMTWGDKFSADEVDE 500
FT+ L + A +M +D ++ V AFK FD++G I E L H L + G++ S +EV +
Sbjct: 67 FTEFLTMMARKMK-DTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVAD 125
Query: 501 AYDQMEIDDKGFID 542
+ + D G I+
Sbjct: 126 MIREADTDGDGVIN 139
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 414 DEEGKID-SERLRHALMTWGDKFSADEVDEAYDQMEIDDKGFIDTTKLITMLTASAE 581
D G ID +E L D + +EV EA+ + D G+I +L +LT+ E
Sbjct: 60 DGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGE 116
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 83.0 bits (196), Expect = 3e-17
Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 2/130 (1%)
Frame = +3
Query: 114 SRKAKRTGSNVFSMFSQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELD 293
++ AKR S F+ + Q+ E KEAF L+D D DG IG+ D++ SL + ASE ++
Sbjct: 28 AQAAKRASSGAFAQLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSIN 87
Query: 294 EMVGEAPGPINFTQLLGLFANRMSGGSDEDDVVINAFKTFD--EEGKIDSERLRHALMTW 467
M PIN L + + S +D ++ AF TFD + GKI +R AL +
Sbjct: 88 HMFESINPPINLAAFLTAMGSMLCRISPRND-LLEAFSTFDDTQSGKIPISTMRDALSSM 146
Query: 468 GDKFSADEVD 497
GD+ EV+
Sbjct: 147 GDRMDPQEVE 156
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 63.3 bits (147), Expect = 3e-11
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Frame = +3
Query: 159 SQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEAPGPINFTQL 338
S++Q E KEAF L D DKDG+I + + + SLG ++ EL ++ E I+ +
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKF 63
Query: 339 LGLFANRMSGGSDEDDVVINAFKTFDEE--GKIDSERLRHALMTWGDKFSADEVDEAYDQ 512
+ +N++ E++ I AF+ FD++ G I++ + + T G+K S +EV +
Sbjct: 64 MSFVSNKLRETESEEE-YIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQE 122
Query: 513 MEIDDKGFIDTTKLITMLTA 572
+ + G D + + A
Sbjct: 123 ADPTNSGSFDYYDFVQRIMA 142
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 51.2 bits (117), Expect = 1e-07
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Frame = +3
Query: 180 FKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEAPGPINFTQLLGLFANR 359
+K+AF L D G I K + + G+ + E+ E+ P ++ Q L + NR
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVL-NR 66
Query: 360 MSGGS--DEDDVVINAFKTFDEE--GKIDSERLRHALMTWGDKFSADEVDEAYDQMEIDD 527
+G + + + F+ FD++ G I LR+ L + G+K S +E+DE + + D
Sbjct: 67 PNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKD 126
Query: 528 KGFIDTTKLITMLTAS 575
G ++ + M+ A+
Sbjct: 127 -GMVNYHDFVQMILAN 141
Score = 42.3 bits (95), Expect = 5e-05
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +3
Query: 177 EFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEAP---GPINF 329
EF + FQ+ D D G+IG +LR SLG S +E+DE++ P G +N+
Sbjct: 78 EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNY 131
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 50.4 bits (115), Expect = 2e-07
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
Frame = +3
Query: 159 SQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGE----APGPIN 326
+++Q + EAF+L D DKD I ++LRA +LG A + E+ +++ + G +
Sbjct: 32 TEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQ 91
Query: 327 FTQLLGLFANRMSGGSDEDDVVINAFKTF--DEEGKIDSERLRHALMTWGDKFSADEVDE 500
+ + ++ D + + AF+ F DE GKI LR + E++
Sbjct: 92 MEDFVRVMTEKIV-ERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEA 150
Query: 501 AYDQMEIDDKGFIDTTKLITMLTASA 578
++ ++D G I+ + I ++ A
Sbjct: 151 MIEEFDLDQDGEINEQEFIAIMMDEA 176
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 29.1 bits (62), Expect = 0.50
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 414 DEEGKIDSERLRHALMTWGDKFSADEVDEAYDQMEID 524
DEEG+ID + + AL+ + DE + +D E+D
Sbjct: 716 DEEGEIDEDEVWKALVDSKPQLEMDEEESDFDSEEMD 752
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.2
Identities = 22/86 (25%), Positives = 37/86 (43%)
Frame = -1
Query: 400 ALMTTSSSSEPPDMRLAKRPNSWVKLMGPGASPTISSSSFSEASLPRESNVARKSFLPMM 221
++ +TSSSS L+ +S +S ISSSS S +S S+ S
Sbjct: 239 SIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSS 298
Query: 220 PSLSWSISWKASLNSATCFCENIEKT 143
S S + +S +S++ F + +
Sbjct: 299 SPTSTSSTISSSSSSSSSFSSTLSSS 324
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 307 SPTISSSSFSEASLPRESNVARKSFLPMMPSLSWSISWKASLNSAT 170
S +++SSS + +SL S + S P + S S+S A+ NSAT
Sbjct: 146 SSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSAT 191
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 310 ASPTISSSSFSEASLPRESNVARKSFLPMMPSLSWSISWKASLNSAT 170
AS SSS S +++ +V+ S P + + SISW +S ++AT
Sbjct: 126 ASNYTQSSSNSTSTMNSTGSVSGGSVYPTNSTTNSSISWNSSTSAAT 172
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 1.5
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = -1
Query: 385 SSSSEPPDMRLAKRPNSWVKLMGPGASPTISSSSFSEASLPRESNVARKSFLPMMPSL 212
S SS+PP R NS V+ A ++S+ FS P ES + S LP +PSL
Sbjct: 277 SVSSDPPSTM--GRSNSAVQSPSYFAHSLVNSTEFST---PNESLSSLPSILPSIPSL 329
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 2.0
Identities = 23/102 (22%), Positives = 40/102 (39%)
Frame = -1
Query: 475 LSPQVMSACXXXXXXXXXXXXXXLKALMTTSSSSEPPDMRLAKRPNSWVKLMGPGASPTI 296
+S +S+ +SSSS + +S +S +
Sbjct: 127 VSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186
Query: 295 SSSSFSEASLPRESNVARKSFLPMMPSLSWSISWKASLNSAT 170
SSSS S +S S+ + S +P+ S S S S +S +S++
Sbjct: 187 SSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSS 228
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 177 EFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMV 302
E +EAF L D G I DLR + LG ++++L M+
Sbjct: 13 EAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLML 54
Score = 25.0 bits (52), Expect = 8.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 486 DEVDEAYDQMEIDDKGFID 542
+E +EA+D ++ KG+ID
Sbjct: 12 EEAEEAFDLFDVTHKGYID 30
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 310 ASPTISSSSFSEASLPRESNVARKSF-LPMMPS 215
+SP++ +++ + P++S V+RKSF P P+
Sbjct: 35 SSPSVPEGTYTVLNNPKQSTVSRKSFSAPTSPT 67
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = -1
Query: 316 PGASPTISSSSFSEASLPRESNVARKSFLPMMPSLSWSISWKASLNSATCFCENI 152
P + ++S S +L E+NV + +P + + + + + S N+A C C +
Sbjct: 83 PAGNTNTPTTSNSNQNL--ENNVTSAASMPAILNAAGQLEFSPSTNNALCCCTTV 135
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 456 LMTWGDKFSADE-VDEAYDQMEIDDKGFIDTTKLITM 563
++ + D S DE V +AYD E+DD + +++T+
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTV 37
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 6.2
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = -1
Query: 391 TTSSSSEPPDMRLAKRPNSWVKLMGPGASPTISSSSFSEASLPRESNVARKSFLPMMPSL 212
++SSSS P +S +S + SSSS S S S+ ++ S P
Sbjct: 158 SSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKS 217
Query: 211 SWSISWKASLNSAT 170
S S + + S T
Sbjct: 218 SSKFSSSSFITSTT 231
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 168 QVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASE 281
+ A+FK+ F DKD + + +L A + L +LA +
Sbjct: 212 EYAKFKDKFPEAPLDKDNLQTQKELEARIECLKQLAEK 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,004
Number of Sequences: 5004
Number of extensions: 33675
Number of successful extensions: 213
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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