Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_N23
(572 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 72 5e-13
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 72 5e-13
AY095181-1|AAM12274.1| 320|Drosophila melanogaster GM07634p pro... 72 5e-13
AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein. 71 8e-13
AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p pro... 69 6e-12
AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein ... 69 6e-12
AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed... 69 6e-12
S68526-1|AAD14015.2| 624|Drosophila melanogaster pol polyprotei... 68 8e-12
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. 64 1e-10
AY089271-1|AAL90009.1| 451|Drosophila melanogaster AT07338p pro... 50 2e-06
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc... 50 3e-06
AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 44 1e-04
AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ... 42 8e-04
X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros... 41 0.001
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros... 39 0.006
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 36 0.051
AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein ... 35 0.068
AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed... 35 0.068
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. 33 0.21
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 32 0.63
AY069775-1|AAL39920.1| 2171|Drosophila melanogaster SD01562p pro... 30 1.9
AE013599-2783|AAF57626.1| 2599|Drosophila melanogaster CG15099-P... 30 1.9
AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p pro... 30 2.6
AE014298-2161|AAF48463.1| 916|Drosophila melanogaster CG6324-PA... 30 2.6
BT021376-1|AAX33524.1| 758|Drosophila melanogaster LD46788p pro... 29 3.4
AY113567-1|AAM29572.1| 275|Drosophila melanogaster RH12281p pro... 29 3.4
AY069694-1|AAL39839.1| 843|Drosophila melanogaster LD46629p pro... 29 3.4
AE014298-972|AAF46216.3| 758|Drosophila melanogaster CG33691-PA... 29 3.4
AE014298-971|AAZ52507.1| 702|Drosophila melanogaster CG33691-PC... 29 3.4
AE014298-970|AAO41636.1| 843|Drosophila melanogaster CG33691-PB... 29 3.4
AE014297-3185|AAF56020.2| 337|Drosophila melanogaster CG33110-P... 29 3.4
BT016139-1|AAV37024.1| 587|Drosophila melanogaster AT30209p pro... 29 4.5
AE014134-2709|AAF53528.3| 263|Drosophila melanogaster CG31737-P... 29 4.5
U92536-1|AAD41441.1| 1487|Drosophila melanogaster RECQ helicase ... 28 7.8
AE014297-1368|AAF54691.1| 1487|Drosophila melanogaster CG6920-PA... 28 7.8
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 72.1 bits (169), Expect = 5e-13
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +2
Query: 284 DTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKSPVHAFTPP 463
D I G H G T+ + Y W N+ K + + R C CQ++K T+HTK+P+ P
Sbjct: 903 DPIQG-GHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMTITETP 961
Query: 464 TSRFSHVHVDIIGPLPIS-NGFKYCLTAVDRFTRW 565
F V VD IGPLP S NG +Y +T + T++
Sbjct: 962 EHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKY 996
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 23 IRYIAGDHNHVADALSRVESINKTMDL 103
+ Y+ G NHVADALSR+ +I + D+
Sbjct: 718 VEYLKGKDNHVADALSRI-TIKELKDI 743
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
DNA polymerase protein.
Length = 1000
Score = 72.1 bits (169), Expect = 5e-13
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +2
Query: 284 DTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKSPVHAFTPP 463
D I G H G T+ + Y W N+ K + + R C CQ++K T+HTK+P+ P
Sbjct: 666 DPIQG-GHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMTITETP 724
Query: 464 TSRFSHVHVDIIGPLPIS-NGFKYCLTAVDRFTRW 565
F V VD IGPLP S NG +Y +T + T++
Sbjct: 725 EHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKY 759
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 23 IRYIAGDHNHVADALSRVESINKTMDL 103
+ Y+ G NHVADALSR+ +I + D+
Sbjct: 481 VEYLKGKDNHVADALSRI-TIKELKDI 506
>AY095181-1|AAM12274.1| 320|Drosophila melanogaster GM07634p
protein.
Length = 320
Score = 72.1 bits (169), Expect = 5e-13
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +2
Query: 284 DTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKSPVHAFTPP 463
D I G H G T+ + Y W N+ K + + R C CQ++K T+HTK+P+ P
Sbjct: 54 DPIQG-GHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMTITETP 112
Query: 464 TSRFSHVHVDIIGPLPIS-NGFKYCLTAVDRFTRW 565
F V VD IGPLP S NG +Y +T + T++
Sbjct: 113 EHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKY 147
>AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein.
Length = 994
Score = 71.3 bits (167), Expect = 8e-13
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +2
Query: 284 DTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKSPVHAFTPP 463
D I G H G T I Y WP + K + +TC+ CQ++K+T HTK+P+ P
Sbjct: 661 DPIEG-GHTGISRTQSKIKRFYYWPQMTKTISKYVKTCLKCQQAKITTHTKTPLTLMPTP 719
Query: 464 TSRFSHVHVDIIGPLPIS-NGFKYCLTAVDRFTRW 565
+ F V +D IGPLP S +G +Y +T + T++
Sbjct: 720 ATAFDTVLIDTIGPLPKSEDGNEYAVTIICDLTKF 754
Score = 29.1 bits (62), Expect = 4.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 23 IRYIAGDHNHVADALSRV 76
+ Y+ G NH+ADALSR+
Sbjct: 473 VEYLKGKDNHIADALSRI 490
>AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p
protein.
Length = 370
Score = 68.5 bits (160), Expect = 6e-12
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = +2
Query: 284 DTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKSPVHAFTPP 463
D I G H G T+ I Y W N+ + + + R C CQ SK T HTK+P+ P
Sbjct: 36 DPIQG-GHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTKTPLTYTETP 94
Query: 464 TSRFSHVHVDIIGPLPISN-GFKYCLTAVDRFTRW 565
T+ F V VD +GPLP S G +Y +T + T++
Sbjct: 95 TNAFDIVIVDTVGPLPKSEYGNEYIVTLICDLTKY 129
>AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein
protein.
Length = 826
Score = 68.5 bits (160), Expect = 6e-12
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = +2
Query: 284 DTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKSPVHAFTPP 463
D I G H G T+ I Y W N+ + + + R C CQ SK T HTK+P+ P
Sbjct: 492 DLIQG-GHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTKTPLTYTETP 550
Query: 464 TSRFSHVHVDIIGPLPISN-GFKYCLTAVDRFTRW 565
T+ F V VD +GPLP S G +Y +T + T++
Sbjct: 551 TNAFDIVIVDTVGPLPKSEYGNEYIVTLICDLTKY 585
>AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 826
Score = 68.5 bits (160), Expect = 6e-12
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = +2
Query: 284 DTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKSPVHAFTPP 463
D I G H G T+ I Y W N+ + + + R C CQ SK T HTK+P+ P
Sbjct: 492 DPIQG-GHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTKTPLTYTETP 550
Query: 464 TSRFSHVHVDIIGPLPISN-GFKYCLTAVDRFTRW 565
T+ F V VD +GPLP S G +Y +T + T++
Sbjct: 551 TNAFDIVIVDTVGPLPKSEYGNEYIVTLICDLTKY 585
>S68526-1|AAD14015.2| 624|Drosophila melanogaster pol polyprotein
protein.
Length = 624
Score = 68.1 bits (159), Expect = 8e-12
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +2
Query: 305 HPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKSPVHAFTPPTSRFSHV 484
H G T++ + WP + K + TC+ CQ+SK T+HTK+P+ P + F V
Sbjct: 296 HSGISRTLRKMKNCCCWPRMTKAISEYVETCLKCQQSKTTKHTKTPLTITETPATAFDIV 355
Query: 485 HVDIIGPLPIS-NGFKYCLTAVDRFTRW 565
+D IGPLP S NG +Y +T + T++
Sbjct: 356 LIDTIGPLPRSENGNEYAVTIICDLTKY 383
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 11 FTTDIRYIAGDHNHVADALSRVESINKTMDLNK 109
F + Y+ G NHVADALSR+ +I + +N+
Sbjct: 101 FEFTVEYLKGKDNHVADALSRI-TIGELKAMNR 132
>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
Length = 1494
Score = 64.1 bits (149), Expect = 1e-10
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 8/195 (4%)
Frame = +2
Query: 5 RGFTTDIRYIAGDHNHVADALSRVESIN--KTMDL-NKIHTAQENDS---ELQQLVENNS 166
+G+ +I + AG DALSR +I +T + + Q D+ E++QL+EN
Sbjct: 1110 QGYDFEIVHRAGSRMQHVDALSRCTNIMVIQTNSFEDNLVICQGKDTKLKEIRQLLENTE 1169
Query: 167 SSLKLQLLHFSDFRKKLYCDTSGTSPRLYLPSEFRRQAFDTIHG-LNHPGAKTTIKLITA 343
+ L + +Y T+ Y+P E Q H L H G I+ I
Sbjct: 1170 NKL------YEMRNGIVYKKTNENRLLFYVPIEMEEQVLYKYHNELGHVGRDKMIEAIMK 1223
Query: 344 RYVWPNIRKDCRLWTRTCVDC-QRSKVTRHTKSPVHAFTPPTSRFSHVHVDIIGPLPISN 520
Y +PN+++ C C+ C S T T+ +H F +H+D GP+ ++
Sbjct: 1224 NYWFPNLKQKCSTHISNCLKCISFSPKTGKTEGFLHNIPKGNKPFEIIHIDHYGPVDLAR 1283
Query: 521 GFKYCLTAVDRFTRW 565
K+ L VD FT++
Sbjct: 1284 PKKHILVIVDAFTKF 1298
>AY089271-1|AAL90009.1| 451|Drosophila melanogaster AT07338p
protein.
Length = 451
Score = 50.4 bits (115), Expect = 2e-06
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 341 ARYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKSPVHAFTPPTSRFSHVHVDIIGPLPIS- 517
ARY WP + + R + R C C K ++ + P ++ V D +GPLP S
Sbjct: 118 ARYYWPGMHRGVRKYVRNCECCMMYKPSQLQAAGKMLTQVPEEPWATVCADFVGPLPRSK 177
Query: 518 NGFKYCLTAVDRFTRWPE 571
+G L VDRF++W E
Sbjct: 178 HGNSMLLVLVDRFSKWTE 195
>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
transcriptase polyprotein protein.
Length = 1041
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +2
Query: 269 RRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKSPVH 448
+R+ H H A+ +K I Y +P + + + C+ CQ++K RH + +
Sbjct: 744 QREIVSLEHNRAHRAAQENVKQILQYYFFPKMSQIAATFVSNCLVCQKAKYDRHPQKQIL 803
Query: 449 AFTP-PTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRW 565
TP P+ +H+DI S G Y LT +D+F+++
Sbjct: 804 GRTPIPSHVGETLHIDI-----FSTGRNYFLTCIDKFSKF 838
>AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein
protein.
Length = 849
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/57 (40%), Positives = 35/57 (61%)
Frame = +2
Query: 20 DIRYIAGDHNHVADALSRVESINKTMDLNKIHTAQENDSELQQLVENNSSSLKLQLL 190
DI+YI G NHVADALSR++ + H+A+E++S+L L E + K Q++
Sbjct: 568 DIKYIKGKENHVADALSRIKIEQAFFGESTQHSAEEDNSDLIGLSEKAINYHKRQII 624
Score = 35.1 bits (77), Expect = 0.068
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = +2
Query: 260 SEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVT-RHTK 436
+ F+ +T L HPG + T+KL + Y +PN + + C C +K R+T+
Sbjct: 711 ASFKELILNTHEKLLHPGIQKTVKLFSENYYFPNSQLLIQNIINECQVCNLAKTEHRNTE 770
Query: 437 SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRW 565
P+ P +DI S G Y L+ +D ++++
Sbjct: 771 MPMKITPKPEHCRDKFVIDIYS----SEGNHY-LSCIDIYSKF 808
>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
protein.
Length = 1006
Score = 41.5 bits (93), Expect = 8e-04
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 20 DIRYIAGDHNHVADALSRVESINKTMDLNKIHTAQENDSELQQLVENNSSSLKLQLL 190
DI+Y+ G NHVADALSR+ H+AQE++ L L E ++ Q++
Sbjct: 553 DIKYVKGKENHVADALSRITIEEAFFTEATQHSAQEDNQNLISLTEKAVNNYNRQVI 609
Score = 33.1 bits (72), Expect = 0.27
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 260 SEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVT-RHTK 436
+EF+ + L HPG + T KL + Y +PN + + C C +K R+TK
Sbjct: 695 AEFKELILQSHEKLLHPGIQKTKKLFSENYFFPNSQLQIQNIINECQVCNLAKSEHRNTK 754
Query: 437 SP 442
P
Sbjct: 755 VP 756
>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
Drosophila melanogastercopia-like element 17.6. ).
Length = 1058
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +2
Query: 11 FTTDIRYIAGDHNHVADALSRVESINKTMDLNKIHTAQENDSELQQLVENNSSSLKLQLL 190
F DI+YI G N VADALSR++ + H+A+E++S+L + E ++ Q++
Sbjct: 603 FDFDIKYIKGKENCVADALSRIKLEETYLSEQTQHSAEEDNSDLIFITERPLNTFNRQVI 662
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/102 (23%), Positives = 44/102 (43%)
Frame = +2
Query: 260 SEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKS 439
+EF+ L HPG + T KL Y +PN + + C C +K T H +
Sbjct: 748 AEFKELILTAHEKLLHPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAK-TEHRNT 806
Query: 440 PVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRW 565
+ T P + H + + S G K+ ++ +D ++++
Sbjct: 807 DMPTKTTP--KPEHCREKFMIDIYSSEG-KHYVSCIDIYSKF 845
>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
Drosophila melanogastertransposable element 297. ).
Length = 1059
Score = 38.7 bits (86), Expect = 0.006
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +2
Query: 23 IRYIAGDHNHVADALSRVESINKTMDLNKIHTAQENDSELQQLVENNSSSLKLQLLHFSD 202
I YI G N VADALSR++ H+A+E++S L L E + K Q++
Sbjct: 606 IDYIKGKENSVADALSRIKIEENHHSEATQHSAEEDNSNLIHLTEKPINYFKKQIIFIKS 665
Query: 203 FRKKL 217
+ K+
Sbjct: 666 DKNKV 670
Score = 29.1 bits (62), Expect = 4.5
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = +2
Query: 260 SEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVT-RHTK 436
+EF+ + L HPG + KL + +PN + + C C +K R+TK
Sbjct: 748 AEFKEIILQSHEKLLHPGIQKMTKLFKENHFFPNSQLLIQNIINECNICNLAKTEHRNTK 807
Query: 437 SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRW 565
P+ P H + + S G K+ ++ +D ++++
Sbjct: 808 MPLKITPNP----EHCREKFVVDIYSSEG-KHYISCIDIYSKF 845
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 35.5 bits (78), Expect = 0.051
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 3/167 (1%)
Frame = +2
Query: 74 VESINKTMDLNKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFR-KKLYCDTSGTSPRL 250
V+ + T+ N+I +D+ L+E S+ HF R K L + G +
Sbjct: 800 VKILKGTLKPNRICAFLADDNN-SALIEKAFSTYFAHKKHFKIIRCKSLLHEIVGNPEQN 858
Query: 251 YLPSEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVTRH 430
E+ + NH G T + +PN++ R C C + K R
Sbjct: 859 KFIQEYHTNS-------NHRGIDETFLHLKRETYFPNMKNKISELIRNCETCLKLKYDRQ 911
Query: 431 TKSPVHAFTP--PTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRW 565
++ V TP P+ +H+DI I+N F LT +D+F+++
Sbjct: 912 PQNIVFE-TPETPSKPLDIIHIDI---YTINNNFN--LTIIDKFSKF 952
>AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein
protein.
Length = 1150
Score = 35.1 bits (77), Expect = 0.068
Identities = 25/93 (26%), Positives = 39/93 (41%)
Frame = +2
Query: 182 QLLHFSDFRKKLYCDTSGTSPRLYLPSEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPN 361
+++ ++F K L C T Y +EF+ L HPG + TI L Y +P+
Sbjct: 804 EIISPNNFTKLLRCTTKLIDILTY--AEFKDLILKKHKELLHPGIEKTINLFKEEYYYPD 861
Query: 362 IRKDCRLWTRTCVDCQRSKVTRHTKSPVHAFTP 460
+K + C C +K T H + TP
Sbjct: 862 SQKLIQTIINECQICYLAK-TEHQTQMTYETTP 893
Score = 31.5 bits (68), Expect = 0.84
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 11 FTTDIRYIAGDHNHVADALSRVESINKTMDLNKIHTAQENDSELQQLVENN 163
F I+Y+ G NHVADALSR + +++ A D+ + +E+N
Sbjct: 676 FDYKIKYLPGKENHVADALSRTK-----IEVMVGEVANSADATIHSAIEDN 721
>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1065
Score = 35.1 bits (77), Expect = 0.068
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 11 FTTDIRYIAGDHNHVADALSRVESINKTMDLNKIHTAQENDSELQQLVENNSSSLKL 181
F I+Y+ G NHVADALSRV+ + + + + + E+N S + L
Sbjct: 591 FDYHIKYLPGKENHVADALSRVKIEENFLGETSSNISLPTQATIHSAQEDNQSYISL 647
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = +2
Query: 260 SEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKS 439
SEF+ + L HPG + L +Y +P+ +K + C C SK
Sbjct: 748 SEFKEIIIKSHRELLHPGIEKQTNLFKEKYYYPDYQKLIQNIINECEVCNISKTEHRDTK 807
Query: 440 PVHAFTPPT 466
+ TP T
Sbjct: 808 LRYELTPET 816
>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
Length = 1003
Score = 33.5 bits (73), Expect = 0.21
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +2
Query: 293 HGLNHPGAKTTIKL-ITARYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKSPVHAFTP-PT 466
H H G T I+L + +Y +P + RL T +C C+ K RH P TP P
Sbjct: 701 HRRAHRGP-TEIRLQLLEKYYFPRMSSTIRLQTSSCQCCKLYKYERHPNKPNLQPTPIPN 759
Query: 467 SRFSHVHVDI 496
+H+DI
Sbjct: 760 YPCEILHIDI 769
>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
transcriptase protein.
Length = 1088
Score = 31.9 bits (69), Expect = 0.63
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Frame = +2
Query: 242 PRLYLPSEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKV 421
P + +E + D + NH G T I + +P++++ R C C + K
Sbjct: 738 PEITDSTEIEKIITDYHYNSNHRGIDETYLHIKRQQFFPHMKERITQLIRKCETCLKLKY 797
Query: 422 TRHTKSPVHAFTP-PTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRW 565
R + + + P+ +H+DI + Y LT +D+F+++
Sbjct: 798 DRQPQKITYQISELPSKPLDILHIDI-----YTINKNYNLTIIDKFSKF 841
>AY069775-1|AAL39920.1| 2171|Drosophila melanogaster SD01562p protein.
Length = 2171
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 8 GFTTDIRYIAGDHNHVADALSRVESI--NKTMDLNKIHTAQEND-SELQQLVENNSSSLK 178
G + D++ GD V DAL++ E I KT L + T EN + L+Q ++ S L+
Sbjct: 889 GVSDDVKRFVGDCESVTDALTQHEKIKSRKTYRLTREKTPGENSLNSLEQKDHDSISELQ 948
Query: 179 LQLLHFSDF 205
L ++
Sbjct: 949 ADALPADEY 957
>AE013599-2783|AAF57626.1| 2599|Drosophila melanogaster CG15099-PA
protein.
Length = 2599
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 8 GFTTDIRYIAGDHNHVADALSRVESI--NKTMDLNKIHTAQEND-SELQQLVENNSSSLK 178
G + D++ GD V DAL++ E I KT L + T EN + L+Q ++ S L+
Sbjct: 1317 GVSDDVKRFVGDCESVTDALTQHEKIKSRKTYRLTREKTPGENSLNSLEQKDHDSISELQ 1376
Query: 179 LQLLHFSDF 205
L ++
Sbjct: 1377 ADALPADEY 1385
>AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p
protein.
Length = 825
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +2
Query: 23 IRYIAGDHNHVADALSRVESINKTMDLNK--IHTAQENDSELQQLVENNSSSLKLQL 187
+ Y+ G N+VADALSR+ +I++ +++K + N S + + + K++L
Sbjct: 612 VEYLKGKDNYVADALSRI-TIDQLKNISKQVLKVTTRNQSRQESCAGKGNKNDKVEL 667
>AE014298-2161|AAF48463.1| 916|Drosophila melanogaster CG6324-PA
protein.
Length = 916
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 59 DALSRVESINKTMDLNKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKK 214
+ + ++ INK +N+IH Q+N E QQ + + Q F+++
Sbjct: 753 ERIRQIHHINKINQINQIHRIQQNQQEPQQFQQPQEIQQRQQFQQPQQFQQR 804
>BT021376-1|AAX33524.1| 758|Drosophila melanogaster LD46788p
protein.
Length = 758
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = -1
Query: 269 ETLKVSINEETYQMCHNIISS*SQKNVITVISVKKNCFQQVVVAHCRFLVQCV 111
+ LKV +++ C N+ + + ++T+I +KN F V + HC+ L++ +
Sbjct: 648 KVLKVCVDKHLVP-CINMKAYNESEQLMTLIEFQKNFFPSVPLDHCKRLIEAL 699
>AY113567-1|AAM29572.1| 275|Drosophila melanogaster RH12281p
protein.
Length = 275
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +3
Query: 48 IMWLTPYHE*NLSTRLWILTKYTLHKKTTVSYNNLLKTILLH*NYSYYIFLTSGRNY 218
I WL YH W+L K+ T + NLL + Y YY+ G Y
Sbjct: 113 ITWLHVYHHSVTPLETWVLVKFLAGGNAT--FPNLLNNFVHVCMYFYYMMAAMGPEY 167
>AY069694-1|AAL39839.1| 843|Drosophila melanogaster LD46629p
protein.
Length = 843
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = -1
Query: 269 ETLKVSINEETYQMCHNIISS*SQKNVITVISVKKNCFQQVVVAHCRFLVQCV 111
+ LKV +++ C N+ + + ++T+I +KN F V + HC+ L++ +
Sbjct: 733 KVLKVCVDKHLVP-CINMKAYNESEQLMTLIEFQKNFFPSVPLDHCKRLIEAL 784
>AE014298-972|AAF46216.3| 758|Drosophila melanogaster CG33691-PA,
isoform A protein.
Length = 758
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = -1
Query: 269 ETLKVSINEETYQMCHNIISS*SQKNVITVISVKKNCFQQVVVAHCRFLVQCV 111
+ LKV +++ C N+ + + ++T+I +KN F V + HC+ L++ +
Sbjct: 648 KVLKVCVDKHLVP-CINMKAYNESEQLMTLIEFQKNFFPSVPLDHCKRLIEAL 699
>AE014298-971|AAZ52507.1| 702|Drosophila melanogaster CG33691-PC,
isoform C protein.
Length = 702
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = -1
Query: 269 ETLKVSINEETYQMCHNIISS*SQKNVITVISVKKNCFQQVVVAHCRFLVQCV 111
+ LKV +++ C N+ + + ++T+I +KN F V + HC+ L++ +
Sbjct: 592 KVLKVCVDKHLVP-CINMKAYNESEQLMTLIEFQKNFFPSVPLDHCKRLIEAL 643
>AE014298-970|AAO41636.1| 843|Drosophila melanogaster CG33691-PB,
isoform B protein.
Length = 843
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = -1
Query: 269 ETLKVSINEETYQMCHNIISS*SQKNVITVISVKKNCFQQVVVAHCRFLVQCV 111
+ LKV +++ C N+ + + ++T+I +KN F V + HC+ L++ +
Sbjct: 733 KVLKVCVDKHLVP-CINMKAYNESEQLMTLIEFQKNFFPSVPLDHCKRLIEAL 784
>AE014297-3185|AAF56020.2| 337|Drosophila melanogaster CG33110-PA
protein.
Length = 337
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +3
Query: 48 IMWLTPYHE*NLSTRLWILTKYTLHKKTTVSYNNLLKTILLH*NYSYYIFLTSGRNY 218
I WL YH W+L K+ T + NLL + Y YY+ G Y
Sbjct: 175 ITWLHVYHHSVTPLETWVLVKFLAGGNAT--FPNLLNNFVHVCMYFYYMMAAMGPEY 229
>BT016139-1|AAV37024.1| 587|Drosophila melanogaster AT30209p
protein.
Length = 587
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 8 GFTTDIRYIAGDHNHVADALSRVESINKTMDLNKIHT 118
GFT+D + ++NH++ L VES+ D+N+ HT
Sbjct: 35 GFTSDRKTDKDNNNHIS-TLQSVESVVTISDVNERHT 70
>AE014134-2709|AAF53528.3| 263|Drosophila melanogaster CG31737-PA
protein.
Length = 263
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 8 GFTTDIRYIAGDHNHVADALSRVESINKTMDLNKIHT 118
GFT+D + ++NH++ L VES+ D+N+ HT
Sbjct: 35 GFTSDRKTDKDNNNHIS-TLQSVESVVTISDVNERHT 70
>U92536-1|AAD41441.1| 1487|Drosophila melanogaster RECQ helicase
homolog protein.
Length = 1487
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 74 VESINKTMDLNKIHTAQENDSELQQLVENNSSSLKLQL 187
V+ KTM N+ T Q+ DS LV NN +S+ L
Sbjct: 231 VKKPEKTMWQNETKTIQDKDSPANPLVSNNLASISTLL 268
>AE014297-1368|AAF54691.1| 1487|Drosophila melanogaster CG6920-PA
protein.
Length = 1487
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 74 VESINKTMDLNKIHTAQENDSELQQLVENNSSSLKLQL 187
V+ KTM N+ T Q+ DS LV NN +S+ L
Sbjct: 231 VKKPEKTMWQNETKTIQDKDSPANPLVSNNLASISTLL 268
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,917,344
Number of Sequences: 53049
Number of extensions: 508381
Number of successful extensions: 1490
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2255362491
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -