Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_N23
(572 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 35 0.036
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 35 0.036
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 35 0.036
Z82270-1|CAB63203.1| 914|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 30 1.0
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 30 1.0
Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical pr... 28 4.1
AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L prot... 28 4.1
AF077539-3|AAC26291.1| 310|Caenorhabditis elegans Hypothetical ... 28 5.4
AC006831-1|AAF39995.1| 558|Caenorhabditis elegans Hypothetical ... 27 7.2
U55363-1|AAK71420.1| 340|Caenorhabditis elegans Serpentine rece... 27 9.5
AF039048-7|AAB94234.2| 688|Caenorhabditis elegans Hypothetical ... 27 9.5
AC024859-9|ABQ13045.1| 296|Caenorhabditis elegans Hypothetical ... 27 9.5
AC024859-8|ABQ13046.1| 337|Caenorhabditis elegans Hypothetical ... 27 9.5
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 35.1 bits (77), Expect = 0.036
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Frame = +2
Query: 245 RLYLPSEFRRQAFDTIH-GL--NHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 415
R +P + R +H G+ H G K +++ ++ WP +R RTC C +
Sbjct: 1543 RSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCA 1602
Query: 416 KVTRHTKSPVHAFTPPTSRF--SHVHVDIIGPLPISNGFKYCLTAVDRFTRW 565
H+K + TP F V D++ G +Y LT +D FT++
Sbjct: 1603 --NDHSKL-TSSLTPYRMTFPLEIVACDLMDVGLSVQGNRYILTIIDLFTKY 1651
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 35.1 bits (77), Expect = 0.036
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Frame = +2
Query: 245 RLYLPSEFRRQAFDTIH-GL--NHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 415
R +P + R +H G+ H G K +++ ++ WP +R RTC C +
Sbjct: 1446 RSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCA 1505
Query: 416 KVTRHTKSPVHAFTPPTSRF--SHVHVDIIGPLPISNGFKYCLTAVDRFTRW 565
H+K + TP F V D++ G +Y LT +D FT++
Sbjct: 1506 --NDHSKL-TSSLTPYRMTFPLEIVACDLMDVGLSVQGNRYILTIIDLFTKY 1554
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 35.1 bits (77), Expect = 0.036
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Frame = +2
Query: 245 RLYLPSEFRRQAFDTIH-GL--NHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 415
R +P + R +H G+ H G K +++ ++ WP +R RTC C +
Sbjct: 1457 RSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCA 1516
Query: 416 KVTRHTKSPVHAFTPPTSRF--SHVHVDIIGPLPISNGFKYCLTAVDRFTRW 565
H+K + TP F V D++ G +Y LT +D FT++
Sbjct: 1517 --NDHSKL-TSSLTPYRMTFPLEIVACDLMDVGLSVQGNRYILTIIDLFTKY 1565
>Z82270-1|CAB63203.1| 914|Caenorhabditis elegans Hypothetical
protein F53H2.1 protein.
Length = 914
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 197 SDFRKKLYCDTSGTSPRLYLPSEFRRQAFDTIHGLN 304
++F++K+ C T SP+ Y P FRR D I LN
Sbjct: 224 NNFQQKMQCFTI-CSPQCYSPQNFRRANIDEISSLN 258
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
F15D4.7 protein.
Length = 2268
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +2
Query: 389 RTCVDCQRSKVTR----HTKSPVHAFTPPTSRFSHVHVDIIGPLPISN 520
R+CV CQ+ H K T P++ F HV +D +GP+ N
Sbjct: 1768 RSCVVCQKVNAKPFKYPHAKILPGCRTEPSTPFQHVGLDYLGPIAYKN 1815
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +2
Query: 389 RTCVDCQRSKVTR----HTKSPVHAFTPPTSRFSHVHVDIIGPLPISN 520
R+CV CQ+ H K T P++ F HV +D +GP+ N
Sbjct: 1768 RSCVVCQKVNAKPFKYPHAKILPGCRTEPSTPFQHVGLDYLGPIAYKN 1815
>Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical
protein C52E4.6a protein.
Length = 480
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 412 FKSYTPHEVASACIYTTNEQIFSCTCRYYWTTTDFEWFQVLLDSSRPVHTLA 567
F Y P +A ACI+ + + +T F WF+ S R V +A
Sbjct: 273 FMRYKPETIACACIFLAARTVENPIA---LPSTPFHWFEAFDTSDRDVEAIA 321
>AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L
protein.
Length = 480
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 412 FKSYTPHEVASACIYTTNEQIFSCTCRYYWTTTDFEWFQVLLDSSRPVHTLA 567
F Y P +A ACI+ + + +T F WF+ S R V +A
Sbjct: 273 FMRYKPETIACACIFLAARTVENPIA---LPSTPFHWFEAFDTSDRDVEAIA 321
>AF077539-3|AAC26291.1| 310|Caenorhabditis elegans Hypothetical
protein T25D3.2 protein.
Length = 310
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 434 KSPVHAFTPPTSRFSH 481
K+PVH + PPTSRF+H
Sbjct: 61 KTPVH-YRPPTSRFAH 75
>AC006831-1|AAF39995.1| 558|Caenorhabditis elegans Hypothetical
protein ZK121.2 protein.
Length = 558
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +2
Query: 62 ALSRVESINKTMDLNKIHTAQENDS--ELQQLVE---NNSSSLKLQLLHFSDFRKKLYCD 226
A +++ S +K++ T + S +L+ V+ + S + QLL F K+L D
Sbjct: 118 AQNKLWSTSKSLSRESTGTEYSDRSGIDLRNFVDRTLHKSEEDRKQLLEFEKQLKELILD 177
Query: 227 TSGTSPRLYLPSEFRR 274
S S R LPS + R
Sbjct: 178 DSTQSKRFELPSSYHR 193
>U55363-1|AAK71420.1| 340|Caenorhabditis elegans Serpentine
receptor, class h protein30 protein.
Length = 340
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 290 IHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVTR--HTKSPV 445
I GL H GA TT+ + + + + K LW CV C R + HT S +
Sbjct: 286 IFGLCH-GAATTLVHLLSNKPFRSTMKAQLLWVINCVTCSRHSSSNKVHTLSSI 338
>AF039048-7|AAB94234.2| 688|Caenorhabditis elegans Hypothetical
protein F16B4.3 protein.
Length = 688
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 541 CQAILETIRNR*WSNNIDMYMRKSARWWCKCMHWRLR 431
C+ IL T+RN S N+D ++ R+ K ++ R
Sbjct: 157 CERILSTMRNFAGSENLDSFLTSFVRYVAKSPNFSFR 193
>AC024859-9|ABQ13045.1| 296|Caenorhabditis elegans Hypothetical
protein Y71H2AM.14a protein.
Length = 296
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +2
Query: 38 GDHNHVADALSRVESINKTMDLNKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKKL 217
G+ + D + I + +LN EN + L+ ++N + KL HFS KKL
Sbjct: 230 GNKVYYMDIRETNDPIYRRGELNPYDYFAENWTPLKYDIDNQTIIRKLMCFHFSKIGKKL 289
>AC024859-8|ABQ13046.1| 337|Caenorhabditis elegans Hypothetical
protein Y71H2AM.14b protein.
Length = 337
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +2
Query: 38 GDHNHVADALSRVESINKTMDLNKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKKL 217
G+ + D + I + +LN EN + L+ ++N + KL HFS KKL
Sbjct: 271 GNKVYYMDIRETNDPIYRRGELNPYDYFAENWTPLKYDIDNQTIIRKLMCFHFSKIGKKL 330
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,913,412
Number of Sequences: 27780
Number of extensions: 270345
Number of successful extensions: 918
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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