Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N22
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...   109   3e-25
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||...    27   1.3  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    27   2.2  
SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.7  
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    25   8.9  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   8.9  

>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score =  109 bits (261), Expect = 3e-25
 Identities = 55/177 (31%), Positives = 105/177 (59%), Gaps = 8/177 (4%)
 Frame = +2

Query: 8   VNILNPPHVVLVHGEQNEMSRLKAALQRE-HRGKI--AVHTPRNTQQLCLTFRGDKTAKV 178
           ++++N  H++LVHGEQ  M RLK+AL  + H  K+   V+TPRN   L L F+G++  + 
Sbjct: 431 IDLVNADHIILVHGEQTNMGRLKSALASKFHNRKVDVKVYTPRNCVPLYLPFKGERLVRA 490

Query: 179 MGSLALEAPEPGRVLQGVLVKRNFNYHILAPSDLHKYAELSQSEVTQRQSVQYAGSVPLL 358
           +G +A+  P+ G ++ G+L++++ NY +++  DL  +++L+ + +TQ+Q + +  S+ L 
Sbjct: 491 LGKVAVHKPKEGDIMSGILIQKDANYKLMSAEDLRDFSDLTTTVLTQKQVIPFFSSMELA 550

Query: 359 RHVLMQLAGTI----TFLTETRWRLYSCIDLTL-DNGIVTLEWNAQPVSDMYADALV 514
              L Q+ G +    T   + ++ +   I LTL     + LEW    ++D  AD+++
Sbjct: 551 NFHLKQMFGYVKQSKTKAGQPQYTVMDAITLTLIQEHKLALEWVGNIMNDTIADSVI 607


>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = +2

Query: 8   VNILNPPHVVLVHGEQNEMSRLKAALQREHRGKIAVHTPRNTQQLCL 148
           VN+L   H  +++ ++  +  ++A++QR+ R   A++T  + Q + L
Sbjct: 151 VNVLAQMHQQMLNEQEESLGGIEASVQRQKRMGYAMNTELSEQNVLL 197


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 297 SSAYLWRSDGARMW*LKFLLTKTPCSTRPGSGASSASEPI 178
           SS YLW   G     +  L  KTP   RP S + S S P+
Sbjct: 250 SSHYLWVRHGKLTRSVSLLQHKTPRRIRPKSLSKSNSTPL 289


>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 7/34 (20%), Positives = 20/34 (58%)
 Frame = +2

Query: 404 ETRWRLYSCIDLTLDNGIVTLEWNAQPVSDMYAD 505
           E   R++  +++ L  G++ ++WN + +   +A+
Sbjct: 14  ELHLRIHDVVNIPLITGVIFVKWNIEGIHSRHAN 47


>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 53  QNEMSRLKAALQREHRGKIAVHTPRNT 133
           Q+E  R K + Q+E RGK+A    RNT
Sbjct: 146 QSEAERHKFSAQKERRGKLA--ATRNT 170


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
 Frame = -3

Query: 102 PRCSRCSAAFSRDISF---CSPWTSTTCG 25
           PRC +C    +  I F    S WT   CG
Sbjct: 214 PRCKKCRGYINPFIQFTMASSKWTCNLCG 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,294,173
Number of Sequences: 5004
Number of extensions: 22239
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)