Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_N22
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973... 131 4e-31
12_01_0079 + 644754-645932,645966-646061,646193-647122 34 0.059
11_01_0078 + 609005-610183,610217-610312,610444-611373 34 0.059
09_04_0020 + 13837257-13837281,13837364-13837550,13837655-138377... 33 0.14
03_06_0209 - 32377045-32378008,32378086-32378210,32378772-323788... 29 1.7
03_05_0340 + 23294044-23294166,23294395-23294640,23294907-232949... 29 2.2
02_05_0310 + 27769988-27770830 28 3.9
02_04_0113 - 19861904-19862197,19862338-19862496,19862580-198638... 28 3.9
10_08_0773 + 20474642-20475835 27 8.9
09_06_0183 - 21406474-21406636,21407412-21407956 27 8.9
01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386 27 8.9
>03_06_0716 -
35695158-35696795,35697075-35697288,35697290-35697372,
35697695-35697865
Length = 701
Score = 131 bits (316), Expect = 4e-31
Identities = 69/172 (40%), Positives = 107/172 (62%), Gaps = 6/172 (3%)
Frame = +2
Query: 17 LNPPHVVLVHGEQNEMSRLKAALQREHRG-KIAVHTPRNTQQLCLTFRGDKTAKVMGSLA 193
L PP++VLVHGE NEMSRLK L + G I V P+N Q + + F +K AK +G LA
Sbjct: 429 LQPPNIVLVHGEANEMSRLKQKLISQFDGTNIKVVNPKNCQSVEMYFSSEKMAKTIGRLA 488
Query: 194 LEAPEPGRVLQGVLVKRNFNYHILAPSDLHKYAELSQSEVTQRQSVQYAGSVPLLRHVLM 373
+ PE G + G+LVK+ F Y I+AP DL Y +LS + +TQR +V Y+GS ++++ L
Sbjct: 489 EKVPEAGESVNGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAVPYSGSFEVIKYRLK 548
Query: 374 QLAGTITFLTE----TRWRLYSCIDLTLDN-GIVTLEWNAQPVSDMYADALV 514
Q+ ++ TE ++ + + L++ VTL+W++ P+SDM +D++V
Sbjct: 549 QIYESVESSTEESDVPTLIVHERVTIRLESESYVTLQWSSDPISDMVSDSVV 600
>12_01_0079 + 644754-645932,645966-646061,646193-647122
Length = 734
Score = 34.3 bits (75), Expect = 0.059
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 375 CMSTWRSSGTDPAYCTDCRCVTSDWLSSAYLWR 277
C W ++ DPAY D RC +SD L S + WR
Sbjct: 130 CTQDWPNAAGDPAYWLDLRC-SSDNLYSGFSWR 161
>11_01_0078 + 609005-610183,610217-610312,610444-611373
Length = 734
Score = 34.3 bits (75), Expect = 0.059
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 375 CMSTWRSSGTDPAYCTDCRCVTSDWLSSAYLWR 277
C W ++ DPAY D RC +SD L S + WR
Sbjct: 130 CTQDWPNAAGDPAYWLDLRC-SSDNLYSGFSWR 161
>09_04_0020 +
13837257-13837281,13837364-13837550,13837655-13837727,
13837769-13837804,13838161-13838281,13838399-13838472,
13838594-13838730,13839262-13839325,13839693-13839758,
13840061-13840130,13840206-13840310,13840840-13840981,
13841343-13841439,13841939-13842460
Length = 572
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 17 LNPPHVVLVHGEQNEMSRLKAALQRE 94
L+P HV+LVHGE+ +M+ LK ++ E
Sbjct: 421 LSPSHVILVHGEKPQMAFLKERIESE 446
>03_06_0209 - 32377045-32378008,32378086-32378210,32378772-32378816,
32379009-32379295,32379778-32381509,32381631-32381971,
32383753-32383876,32384484-32384722,32385156-32385534
Length = 1411
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +2
Query: 155 RGDKTAKVMGSLALEAPEPGRVLQGVLVKRNFNYH--ILAPSDLHKYAELSQSEVTQRQS 328
+ D +K+ GS ++ E G + G V H + + + ++S+ EVTQ
Sbjct: 860 QADSGSKIYGSTKADSVESGEKIGGHAVGHASRMHPSLSCNAGMQTGLDVSKEEVTQAGK 919
Query: 329 VQYAGSVPL 355
+ AG VP+
Sbjct: 920 LLIAGDVPM 928
>03_05_0340 +
23294044-23294166,23294395-23294640,23294907-23294945,
23295439-23295805,23295904-23296136,23296496-23296756
Length = 422
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 23 PPHVVLVHGEQNEMSRLKAALQREHRGKIAVHTPRNTQQLCLTFRGDKTAKVM 181
P +V ++ E S + L+ R AVH P Q + L RG++ A VM
Sbjct: 316 PVYVAIMKKSNVERSASRCQLELGARFAAAVHLPDRRQTVVLQRRGERWATVM 368
>02_05_0310 + 27769988-27770830
Length = 280
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 408 VSVRKVMVPASCMSTWRSSGTDPAYCTDCRCVTSDWLSSAYLW 280
VS P++ + RS+GT+P+ T +T SS++LW
Sbjct: 30 VSASAAGTPSTTATRRRSAGTNPSGSTTTDTLTMTSASSSFLW 72
>02_04_0113 -
19861904-19862197,19862338-19862496,19862580-19863833,
19864086-19864124
Length = 581
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 212 GRVLQGVLVKRNF-NYHILAPSDLHKYAELSQSEVTQRQSV 331
G+VLQ V V+ F ++H+ AP+ H Y L ++E Q +V
Sbjct: 362 GQVLQIVEVEGKFEDFHLNAPNLSHVYITLDKTEAQQSVAV 402
>10_08_0773 + 20474642-20475835
Length = 397
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 120 VWTAILPRCSRCSAAFSRDISFCSPWTSTT 31
VWT +CSRCS F +D+ P S+T
Sbjct: 67 VWT----QCSRCSRCFKQDLPLFIPNASST 92
>09_06_0183 - 21406474-21406636,21407412-21407956
Length = 235
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 47 GEQNEMSRLKAALQREHRGKIAVHTPRNT 133
G +NE S K A QRE RG A PR+T
Sbjct: 59 GRENERSSGKKAAQRERRG--AYRRPRST 85
>01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386
Length = 871
Score = 27.1 bits (57), Expect = 8.9
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Frame = -3
Query: 384 PASCMST-----WRSSGTDPAYCTD-----C-RCVTSDWLSSAYLWRSDGARMW*LKFLL 238
P S MS+ W++SG P+Y TD C C S S Y+ R+ +F+
Sbjct: 277 PGSTMSSMNGFFWQNSGRHPSYATDTFWTYCDSCQMSFQYSREYVNRNLACSFCQTEFVA 336
Query: 237 TKTPCSTRP 211
+TP T P
Sbjct: 337 VETPPPTAP 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,879,046
Number of Sequences: 37544
Number of extensions: 188067
Number of successful extensions: 646
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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