Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N22
         (515 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020211-1|AAH20211.1|  684|Homo sapiens cleavage and polyadenyl...   168   1e-41
BC011654-1|AAH11654.1|  684|Homo sapiens cleavage and polyadenyl...   168   1e-41
AK223487-1|BAD97207.1|  684|Homo sapiens cleavage and polyadenyl...   168   1e-41
AF171877-1|AAF00224.1|  684|Homo sapiens cleavage and polyadenyl...   168   1e-41
AC080162-3|AAY14858.1|  684|Homo sapiens unknown protein.             168   1e-41
BC030988-1|AAH30988.1|  554|Homo sapiens CPSF3 protein protein.       155   9e-38
AF017269-1|AAB70268.1|  379|Homo sapiens 73 kDA subunit of cleav...   118   9e-27
AK123968-1|BAC85736.1|  132|Homo sapiens protein ( Homo sapiens ...    35   0.15 
EF036508-1|ABO65094.1|  149|Homo sapiens cleavage and polyadenyl...    33   0.78 
AK090730-1|BAC03509.1|  201|Homo sapiens protein ( Homo sapiens ...    29   7.3  
AL354798-1|CAI16633.1|  633|Homo sapiens ring finger protein 17 ...    29   9.7  
AK001907-1|BAA91972.1|  633|Homo sapiens protein ( Homo sapiens ...    29   9.7  
AB158503-1|BAD69710.1|  151|Homo sapiens splice variant of four ...    29   9.7  

>BC020211-1|AAH20211.1|  684|Homo sapiens cleavage and
           polyadenylation specific factor 3, 73kDa protein.
          Length = 684

 Score =  168 bits (408), Expect = 1e-41
 Identities = 86/175 (49%), Positives = 114/175 (65%), Gaps = 7/175 (4%)
 Frame = +2

Query: 8   VNILNPPHVVLVHGEQNEMSRLKAALQREHRGK----IAVHTPRNTQQLCLTFRGDKTAK 175
           +  L PPHV+LVHGEQNEM+RLKAAL RE+       I VH PRNT+ + L FRG+K AK
Sbjct: 406 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAK 465

Query: 176 VMGSLALEAPEPGRVLQGVLVKRNFNYHILAPSDLHKYAELSQSEVTQRQSVQYAGSVPL 355
           VMG LA + PE G+ + G+LVKRNFNYHIL+P DL  Y +L+ S V Q Q++ Y G   L
Sbjct: 466 VMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNL 525

Query: 356 LRHVLMQLAGTITFL---TETRWRLYSCIDLTLDNGIVTLEWNAQPVSDMYADAL 511
           L + L +L G +  L    +   +++  I +  + G+V LEW A P +DMYAD +
Sbjct: 526 LCYQLQKLTGDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTV 580


>BC011654-1|AAH11654.1|  684|Homo sapiens cleavage and
           polyadenylation specific factor 3, 73kDa protein.
          Length = 684

 Score =  168 bits (408), Expect = 1e-41
 Identities = 86/175 (49%), Positives = 114/175 (65%), Gaps = 7/175 (4%)
 Frame = +2

Query: 8   VNILNPPHVVLVHGEQNEMSRLKAALQREHRGK----IAVHTPRNTQQLCLTFRGDKTAK 175
           +  L PPHV+LVHGEQNEM+RLKAAL RE+       I VH PRNT+ + L FRG+K AK
Sbjct: 406 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAK 465

Query: 176 VMGSLALEAPEPGRVLQGVLVKRNFNYHILAPSDLHKYAELSQSEVTQRQSVQYAGSVPL 355
           VMG LA + PE G+ + G+LVKRNFNYHIL+P DL  Y +L+ S V Q Q++ Y G   L
Sbjct: 466 VMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNL 525

Query: 356 LRHVLMQLAGTITFL---TETRWRLYSCIDLTLDNGIVTLEWNAQPVSDMYADAL 511
           L + L +L G +  L    +   +++  I +  + G+V LEW A P +DMYAD +
Sbjct: 526 LCYQLQKLTGDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTV 580


>AK223487-1|BAD97207.1|  684|Homo sapiens cleavage and
           polyadenylation specific factor 3, 73kDa variant
           protein.
          Length = 684

 Score =  168 bits (408), Expect = 1e-41
 Identities = 86/175 (49%), Positives = 114/175 (65%), Gaps = 7/175 (4%)
 Frame = +2

Query: 8   VNILNPPHVVLVHGEQNEMSRLKAALQREHRGK----IAVHTPRNTQQLCLTFRGDKTAK 175
           +  L PPHV+LVHGEQNEM+RLKAAL RE+       I VH PRNT+ + L FRG+K AK
Sbjct: 406 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAK 465

Query: 176 VMGSLALEAPEPGRVLQGVLVKRNFNYHILAPSDLHKYAELSQSEVTQRQSVQYAGSVPL 355
           VMG LA + PE G+ + G+LVKRNFNYHIL+P DL  Y +L+ S V Q Q++ Y G   L
Sbjct: 466 VMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNL 525

Query: 356 LRHVLMQLAGTITFL---TETRWRLYSCIDLTLDNGIVTLEWNAQPVSDMYADAL 511
           L + L +L G +  L    +   +++  I +  + G+V LEW A P +DMYAD +
Sbjct: 526 LCYQLQKLTGDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTV 580


>AF171877-1|AAF00224.1|  684|Homo sapiens cleavage and
           polyadenylation specificity factor 73 kDa subunit
           protein.
          Length = 684

 Score =  168 bits (408), Expect = 1e-41
 Identities = 86/175 (49%), Positives = 114/175 (65%), Gaps = 7/175 (4%)
 Frame = +2

Query: 8   VNILNPPHVVLVHGEQNEMSRLKAALQREHRGK----IAVHTPRNTQQLCLTFRGDKTAK 175
           +  L PPHV+LVHGEQNEM+RLKAAL RE+       I VH PRNT+ + L FRG+K AK
Sbjct: 406 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAK 465

Query: 176 VMGSLALEAPEPGRVLQGVLVKRNFNYHILAPSDLHKYAELSQSEVTQRQSVQYAGSVPL 355
           VMG LA + PE G+ + G+LVKRNFNYHIL+P DL  Y +L+ S V Q Q++ Y G   L
Sbjct: 466 VMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNL 525

Query: 356 LRHVLMQLAGTITFL---TETRWRLYSCIDLTLDNGIVTLEWNAQPVSDMYADAL 511
           L + L +L G +  L    +   +++  I +  + G+V LEW A P +DMYAD +
Sbjct: 526 LCYQLQKLTGDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTV 580


>AC080162-3|AAY14858.1|  684|Homo sapiens unknown protein.
          Length = 684

 Score =  168 bits (408), Expect = 1e-41
 Identities = 86/175 (49%), Positives = 114/175 (65%), Gaps = 7/175 (4%)
 Frame = +2

Query: 8   VNILNPPHVVLVHGEQNEMSRLKAALQREHRGK----IAVHTPRNTQQLCLTFRGDKTAK 175
           +  L PPHV+LVHGEQNEM+RLKAAL RE+       I VH PRNT+ + L FRG+K AK
Sbjct: 406 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAK 465

Query: 176 VMGSLALEAPEPGRVLQGVLVKRNFNYHILAPSDLHKYAELSQSEVTQRQSVQYAGSVPL 355
           VMG LA + PE G+ + G+LVKRNFNYHIL+P DL  Y +L+ S V Q Q++ Y G   L
Sbjct: 466 VMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNL 525

Query: 356 LRHVLMQLAGTITFL---TETRWRLYSCIDLTLDNGIVTLEWNAQPVSDMYADAL 511
           L + L +L G +  L    +   +++  I +  + G+V LEW A P +DMYAD +
Sbjct: 526 LCYQLQKLTGDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTV 580


>BC030988-1|AAH30988.1|  554|Homo sapiens CPSF3 protein protein.
          Length = 554

 Score =  155 bits (376), Expect = 9e-38
 Identities = 81/166 (48%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
 Frame = +2

Query: 35  VLVHGEQNEMSRLKAALQREHRGK----IAVHTPRNTQQLCLTFRGDKTAKVMGSLALEA 202
           +LVHGEQNEM+RLKAAL RE+       I VH PRNT+ + L FRG+K AKVMG LA + 
Sbjct: 366 ILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKK 425

Query: 203 PEPGRVLQGVLVKRNFNYHILAPSDLHKYAELSQSEVTQRQSVQYAGSVPLLRHVLMQLA 382
           PE G+ + G+LVKRNFNYHIL+P DL  Y +L+ S V Q Q++ Y G   LL + L +L 
Sbjct: 426 PEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLT 485

Query: 383 GTITFL---TETRWRLYSCIDLTLDNGIVTLEWNAQPVSDMYADAL 511
           G +  L    +   +++  I +  + G+V LEW A P +DMYAD +
Sbjct: 486 GDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTV 531


>AF017269-1|AAB70268.1|  379|Homo sapiens 73 kDA subunit of cleavage
           and polyadenylation specificity factor protein.
          Length = 379

 Score =  118 bits (285), Expect = 9e-27
 Identities = 57/92 (61%), Positives = 69/92 (75%), Gaps = 4/92 (4%)
 Frame = +2

Query: 8   VNILNPPHVVLVHGEQNEMSRLKAALQREHRGK----IAVHTPRNTQQLCLTFRGDKTAK 175
           +  L PPHV+LVHGEQNEM+RLKAAL RE+       I VH PRNT+ + L FRG+K AK
Sbjct: 287 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAK 346

Query: 176 VMGSLALEAPEPGRVLQGVLVKRNFNYHILAP 271
           VMG LA + PE G+ + G+LVKRNFNYHIL+P
Sbjct: 347 VMGFLADKKPEQGQRVSGILVKRNFNYHILSP 378


>AK123968-1|BAC85736.1|  132|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41974 fis, clone SKNMC2005772. ).
          Length = 132

 Score = 35.1 bits (77), Expect = 0.15
 Identities = 33/78 (42%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = -3

Query: 381 ASCMSTWRSSGTDPAYCTDCRCVTSDWLSSAYLWRSDGARMW*LKFLLTKTPCSTRPGS- 205
           AS  S WR+     A      CVT    S A+  RS  +R W  +  LT T  ST PGS 
Sbjct: 53  ASLTSPWRNQPLHTAPSGGGCCVTGPACSIAWAGRSPPSR-WIFQRGLTAT--STLPGSC 109

Query: 204 --GASSASEPITLAVLSP 157
             G SSAS P T AV  P
Sbjct: 110 WKGRSSASWPHTGAVCCP 127


>EF036508-1|ABO65094.1|  149|Homo sapiens cleavage and
           polyadenylation specific factor 3 protein.
          Length = 149

 Score = 32.7 bits (71), Expect = 0.78
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 416 RLYSCIDLTLDNGIVTLEWNAQPVSDMYADAL 511
           +++  I +  + G+V LEW A P +DMYAD +
Sbjct: 14  KVFKNITVIQEPGMVVLEWLANPSNDMYADTV 45


>AK090730-1|BAC03509.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33411 fis, clone BRACE2019467, moderately
           similar to UDP-GALACTOSE TRANSLOCATOR. ).
          Length = 201

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 40/140 (28%), Positives = 54/140 (38%), Gaps = 20/140 (14%)
 Frame = -3

Query: 414 QRVSVRKVMVPASCMSTWRSSGTDPAYCTDCRCVTSDWLSSAY---LWRSDGARM--W-- 256
           Q V++  +      +ST R S    A    C C T +W SSA     W S G R+  W  
Sbjct: 57  QYVAISNLPAATFQVSTLRRSSK--AAQAPCGCATCNWASSAQHWAWWGSGGLRVPPWPP 114

Query: 255 *LKF----LLTKTPCSTRPGSGA--SSASEPITLAVLSPRKVRQSCCVFL-------GVW 115
            + F    LL+   CSTRP +G      S  +T++  +       CC  L         W
Sbjct: 115 VVSFLGTHLLSGAWCSTRPSAGYWWLWLSSTLTISSRALPPPCPLCCPLLPPFASLASTW 174

Query: 114 TAILPRCSRCSAAFSRDISF 55
           T  LP     S   S   +F
Sbjct: 175 THYLPLALDSSLVLSTSTAF 194


>AL354798-1|CAI16633.1|  633|Homo sapiens ring finger protein 17
           protein.
          Length = 633

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 203 PEPGRVLQGVLVKRNFNYHILAP-SDLHKYAELSQSEVTQRQSVQYAGSVPLL 358
           P+   VLQ +L KR  + HI+ P SD  K  E  Q E+   + +      PLL
Sbjct: 357 PDAIEVLQQLLSKRQVDIHIMKPRSDHDKKYEEEQWEIRFEELLSAETDTPLL 409


>AK001907-1|BAA91972.1|  633|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11045 fis, clone PLACE1004460. ).
          Length = 633

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 203 PEPGRVLQGVLVKRNFNYHILAP-SDLHKYAELSQSEVTQRQSVQYAGSVPLL 358
           P+   VLQ +L KR  + HI+ P SD  K  E  Q E+   + +      PLL
Sbjct: 357 PDAIEVLQQLLSKRQVDIHIMKPRSDHDKKYEEKQWEIRFEELLSAETDTPLL 409


>AB158503-1|BAD69710.1|  151|Homo sapiens splice variant of four and
           a half LIM domain protein 2 protein.
          Length = 151

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 237 TKTPCSTRPGSGASSASEPITLAVLSPRKVRQSCC 133
           T+     RP S A++AS  +   V SP+ +R S C
Sbjct: 59  TRAAAGMRPASSATAASSQLEPRVSSPKTIRISVC 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,282,098
Number of Sequences: 237096
Number of extensions: 925443
Number of successful extensions: 3390
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3377
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)