Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N22
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132951-1|CAC44310.2|  707|Caenorhabditis elegans Hypothetical ...   138   3e-33
Z48334-7|CAB54223.2|  608|Caenorhabditis elegans Hypothetical pr...    38   0.004
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.     29   2.0  

>AL132951-1|CAC44310.2|  707|Caenorhabditis elegans Hypothetical
           protein Y67H2A.1 protein.
          Length = 707

 Score =  138 bits (333), Expect = 3e-33
 Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 19/188 (10%)
 Frame = +2

Query: 8   VNILNPPHVVLVHGEQNEMSRLKAALQREHRGK---IAVHTPRNTQQLCLTFRGDKTAKV 178
           V  L PPH+VLVHGE +EMSRLK+ ++R+ +     I VH PRNT++L L FRG+KTAKV
Sbjct: 407 VKALKPPHLVLVHGELHEMSRLKSGIERQFQDDNIPIEVHNPRNTERLQLQFRGEKTAKV 466

Query: 179 MGSLALEAPEPGRVLQGVLVKRNFNYHILAPSDLHKYAELSQSEVTQRQSVQYAGSVPLL 358
           +G LA   PE    + GVLVK NF+Y I+ P +L  Y  L  S + QR SV Y+GS+ LL
Sbjct: 467 IGKLAQRVPENNETISGVLVKNNFSYSIMVPEELGSYTSLRISSLEQRMSVHYSGSLKLL 526

Query: 359 RHVLMQLAGTITFLTETRWRLYS--------------CIDLTL--DNGIVTLEWNAQPVS 490
              L QL      +   + +  S               +++T+  ++ +V + W++ PV 
Sbjct: 527 IFNLQQLNDDACLIQNIKLKEISKKGSVTQAITVFQGKVNVTVYGNDHVVVVRWDSNPVY 586

Query: 491 DMYADALV 514
           DMYAD++V
Sbjct: 587 DMYADSVV 594


>Z48334-7|CAB54223.2|  608|Caenorhabditis elegans Hypothetical
           protein F10B5.8 protein.
          Length = 608

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +2

Query: 23  PPHVVLVHGEQNEMSRLKAALQREHRGKIAVHTPRNTQQLCLT 151
           P HV+ VHGE ++M  LK  +++E+  K+ VH P N + + ++
Sbjct: 411 PQHVMFVHGEASKMEFLKGKVEKEY--KVPVHMPANGETVVIS 451


>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/77 (23%), Positives = 34/77 (44%)
 Frame = +2

Query: 188 LALEAPEPGRVLQGVLVKRNFNYHILAPSDLHKYAELSQSEVTQRQSVQYAGSVPLLRHV 367
           L L +P    V+ G+   + + + + A      Y++  Q E T+    +   S+PL    
Sbjct: 582 LTLTSPHEKHVVTGLHPDKYYYFRVAA------YSDRGQGEFTEPMISKTIASIPLSSPT 635

Query: 368 LMQLAGTITFLTETRWR 418
           ++  A T +   E RW+
Sbjct: 636 IVSAAATSSKSVEIRWK 652


>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/77 (23%), Positives = 34/77 (44%)
 Frame = +2

Query: 188 LALEAPEPGRVLQGVLVKRNFNYHILAPSDLHKYAELSQSEVTQRQSVQYAGSVPLLRHV 367
           L L +P    V+ G+   + + + + A      Y++  Q E T+    +   S+PL    
Sbjct: 582 LTLTSPHEKHVVTGLHPDKYYYFRVAA------YSDRGQGEFTEPMISKTIASIPLSSPT 635

Query: 368 LMQLAGTITFLTETRWR 418
           ++  A T +   E RW+
Sbjct: 636 IVSAAATSSKSVEIRWK 652


>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
          Length = 2200

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/77 (23%), Positives = 34/77 (44%)
 Frame = +2

Query: 188 LALEAPEPGRVLQGVLVKRNFNYHILAPSDLHKYAELSQSEVTQRQSVQYAGSVPLLRHV 367
           L L +P    V+ G+   + + + + A      Y++  Q E T+    +   S+PL    
Sbjct: 582 LTLTSPHEKHVVTGLHPDKYYYFRVAA------YSDRGQGEFTEPMISKTIASIPLSSPT 635

Query: 368 LMQLAGTITFLTETRWR 418
           ++  A T +   E RW+
Sbjct: 636 IVSAAATSSKSVEIRWK 652


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,551,023
Number of Sequences: 27780
Number of extensions: 138304
Number of successful extensions: 546
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)