Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N21
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...   202   5e-53
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    30   0.33 
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    27   2.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.1  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    26   5.4  
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar...    26   5.4  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   7.2  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   9.5  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   9.5  

>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score =  202 bits (492), Expect = 5e-53
 Identities = 96/148 (64%), Positives = 116/148 (78%), Gaps = 5/148 (3%)
 Frame = +3

Query: 219 PWNVAGK----SETGIDYDKLIKRFGSQKIDEELIQRFEKVTGKKAHHFLRRGMFFSHRD 386
           PW+V G      E GIDY++LI +FG++KI  E ++RFEK+TGKK H  LRRG FFSHRD
Sbjct: 10  PWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLRRGAFFSHRD 69

Query: 387 LH*ILNLYEAGKKFYLYTGRGPSSESMHIGHMIPFMFTKWLQEVFKVPLIIQLTDDEKAL 566
              IL+ YE  K FYLYTGRGPSS+SMH+GHMIPFMF KWLQ+VF+VPL+IQLTDDEK L
Sbjct: 70  FDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKWLQDVFQVPLVIQLTDDEKFL 129

Query: 567 WKD-ITVEDARPMAFNNAKDIIAVGFDP 647
           +K  +++ED +  A  NAKDIIAVGFDP
Sbjct: 130 FKQGVSLEDCQRFARENAKDIIAVGFDP 157


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -2

Query: 426 ISFQPHTD-SRFSANLDVRKTYLVLKSDELFFQSLSQIFV*VLHRFFDFQIFLLTYHSQC 250
           IS+  H D S+    ++  + Y   ++D L  ++LS ++  + H F D+ +  L YH Q 
Sbjct: 78  ISYLVHWDLSQVKPLVENNRLYQQ-RADALAQENLSYVYSPLFHSFQDWVVRSLLYHPQL 136

Query: 249 QFPICQRHSMGLQ 211
           ++    R   GL+
Sbjct: 137 EYDYVWRIEPGLK 149


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 503 FSKHKRYHMPYVHALR*RSPTSVQVKFLSS 414
           F +HK Y   ++   +  SP ++ V+FL+S
Sbjct: 60  FQEHKEYRESFIRLAKCDSPDAILVRFLAS 89


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -1

Query: 322 SNLCISSSSIF*LPNLFINLS*S-MPVSDLPATFHGSTISSSSIILRFSN 176
           S+L ISSSSI    +  ++ S S +P+S   +T+  S I SSS ++  S+
Sbjct: 633 SSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSS 682


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -1

Query: 631  AIMSLALLKAIGRASSTVISFHRAFSSSVS 542
            ++  L LL++I +AS +VIS ++  SSS+S
Sbjct: 1550 SVYDLLLLQSIAQASVSVISSYKDKSSSIS 1579


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +3

Query: 231 AGKSETGIDYDKLIKRFGSQKIDEELIQ---RFEKVTGK 338
           AGKS+  +   +L KRFGSQ I+ + +Q    F+ +T K
Sbjct: 14  AGKSDLAV---QLAKRFGSQVINADSMQIYRGFDTITNK 49


>SPAC1002.01 ||SPAC1610.05|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 297 DEELIQRFEKVTGKKAHHFLRRGMFFSH 380
           D +L +R  K+TGK+AH F  +   FSH
Sbjct: 59  DTKLWKRLLKITGKQAHQF--KDKPFSH 84


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 374 EKHTSS*KVMSFFSSHFLKSLYKFFID 294
           EK+T S ++ SFF S  LK L+  F D
Sbjct: 429 EKYTLSNRMESFFLSETLKYLFLLFDD 455


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 432 LYTGRGPSSESMHIGHMIPFM 494
           +Y G  P++ S+H+G+++  M
Sbjct: 32  VYLGADPTAASLHVGNLVALM 52


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = -3

Query: 521 EHLLKPFSKHKRYHMPYVHALR*RSPTSVQVKFLSS-LIQIQDSVQISM*EKHTSS*KVM 345
           E+ LK   +H  Y +  + +LR  +    Q+KFLSS L+Q  +S+   +      S    
Sbjct: 724 EYYLKKEVQHSLYILSLIVSLRPSAFDVSQLKFLSSYLLQKSESMDYDLTAIRLLS-NGF 782

Query: 344 SFFSSHF--LKSLYKFFIDFL 288
           S FS H    K +Y   +  L
Sbjct: 783 SVFSKHIDPAKFIYNLVLSSL 803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,412
Number of Sequences: 5004
Number of extensions: 54665
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)