Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N21
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0664 - 21659497-21659547,21659750-21659860,21659971-216600...   208   3e-54
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964...    29   4.2  

>12_02_0664 -
           21659497-21659547,21659750-21659860,21659971-21660039,
           21660442-21660513,21660669-21660749,21661256-21661348,
           21661581-21661733,21661846-21661897,21662033-21662218,
           21662830-21662949,21663059-21663297
          Length = 408

 Score =  208 bits (508), Expect = 3e-54
 Identities = 93/143 (65%), Positives = 119/143 (83%), Gaps = 1/143 (0%)
 Frame = +3

Query: 219 PWNV-AGKSETGIDYDKLIKRFGSQKIDEELIQRFEKVTGKKAHHFLRRGMFFSHRDLH* 395
           PW V AGK   GIDYDKL+ +FG Q++D+ L+ R  ++T +  H FLRRG+FF+HRDL+ 
Sbjct: 27  PWEVSAGKG--GIDYDKLVDQFGCQRLDDALVARVARLTARPPHRFLRRGLFFAHRDLNE 84

Query: 396 ILNLYEAGKKFYLYTGRGPSSESMHIGHMIPFMFTKWLQEVFKVPLIIQLTDDEKALWKD 575
           IL+LYE G+KFYLYTGRGPSSE++H+GH+IPFMFTK+LQ+ FKVPL+IQLTDDEK LWK+
Sbjct: 85  ILDLYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKN 144

Query: 576 ITVEDARPMAFNNAKDIIAVGFD 644
           +TVE+ + +A  NAKDIIA GFD
Sbjct: 145 LTVEETKRLARENAKDIIACGFD 167


>01_07_0383 -
           43195095-43195322,43195408-43195638,43196134-43196454,
           43196512-43196589,43196664-43197727,43197813-43198503,
           43198743-43199541,43200010-43200158,43200159-43200286,
           43200389-43200494,43200835-43200843,43201332-43201821,
           43201896-43202554,43203759-43203851,43204044-43204196,
           43205092-43205194,43205376-43205467,43206229-43206306,
           43206987-43207049,43207339-43207512
          Length = 1902

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = -3

Query: 410 IQIQDSVQISM*EKHTSS*KVMS--FFSSHFLKSLYKFFIDFLTSKS 276
           +++Q+ V+ +   ++TS  KV+S    S+    S+ K+F+DFL SKS
Sbjct: 271 VKLQNCVRDNSSSENTSLSKVLSGTLSSAESAFSMNKYFLDFLKSKS 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,070,442
Number of Sequences: 37544
Number of extensions: 299678
Number of successful extensions: 522
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)