Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N21
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   0.48 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   3.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.9  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 122 RYSIFKRY*NVTNKYEYYNNN 60
           +YS +  Y N  N Y  YNNN
Sbjct: 323 KYSNYNNYNNNYNNYNNYNNN 343


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 353 KVMSFFSSHFLKSLYKFFIDFL 288
           K    F+ +FL S  K FIDF+
Sbjct: 118 KYQEIFNGYFLNSESKDFIDFI 139


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 95  NVTNKYEYYNNN 60
           N  NKY Y NNN
Sbjct: 99  NYNNKYNYNNNN 110


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 643 SNPTAIMSLALLKAIGRASSTVISFHRAFSSSV 545
           S P     + +L+     SST++SF + FS+++
Sbjct: 536 SKPFKYQGITILEKKPSRSSTLVSFLQPFSNTL 568


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -2

Query: 342 LFFQSLSQIFV*VLHRFFDFQIFLLTYHSQCQFPIC 235
           +FF+ ++  +   ++RF+D    ++ Y+  C + IC
Sbjct: 459 MFFECIAISWAFGVNRFYDGIRDMIGYYPCCWWKIC 494


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -2

Query: 342 LFFQSLSQIFV*VLHRFFDFQIFLLTYHSQCQFPIC 235
           +FF+ ++  +   ++RF+D    ++ Y+  C + IC
Sbjct: 512 MFFECIAISWAFGVNRFYDGIRDMIGYYPCCWWKIC 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,506
Number of Sequences: 438
Number of extensions: 3861
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)