Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N18
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    63   1e-10
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     62   3e-10
06_02_0208 - 13026296-13026654,13027394-13027497,13028109-130282...    31   0.52 
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304...    28   4.8  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 30/57 (52%), Positives = 36/57 (63%)
 Frame = +2

Query: 419 KALKAQRKVVKGEHGNRVRKIRTSVHFRRPKTFEPPRQPKYPRKSLPKRNRMDAYNI 589
           +ALKA + V  G      +KIRTSV F RPKT +  R PKYPR S P RN++D Y I
Sbjct: 26  QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQI 82


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 29/57 (50%), Positives = 36/57 (63%)
 Frame = +2

Query: 419 KALKAQRKVVKGEHGNRVRKIRTSVHFRRPKTFEPPRQPKYPRKSLPKRNRMDAYNI 589
           +ALK  + V  G    + +KIRTSV F RPKT +  R PKYPR S P RN++D Y I
Sbjct: 16  QALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQI 72


>06_02_0208 -
           13026296-13026654,13027394-13027497,13028109-13028200,
           13028418-13028774,13029932-13030109,13030454-13030507,
           13030701-13030784,13031521-13031714
          Length = 473

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 20/64 (31%), Positives = 24/64 (37%)
 Frame = +1

Query: 25  EIRVGPVETRRKKNYNC*NXXXXXXGCVDICXXXXXXXXXXXXXXXCFN*GCTCFGTSC* 204
           EI+  P  T+RKK+ NC N       C  I                CF  G  C G  C 
Sbjct: 70  EIKSTP-STKRKKHCNCKNSQCLKLACSSILDLFTGQIDQLYGYCECFAAGLYCDGCHCK 128

Query: 205 EKGN 216
           + GN
Sbjct: 129 QCGN 132


>08_01_0344 +
           3043824-3044123,3044260-3044314,3044810-3044985,
           3045083-3045283,3045383-3045642,3045909-3046222,
           3046399-3046622,3047046-3047398,3047709-3047826,
           3047875-3048133,3048252-3049729
          Length = 1245

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 407 KPVTKALKAQRKVVKGEHGNRVRKIRTSVHFRRPKTFEPPRQPK 538
           K V K +K +  +   +HG+ + K+   + FRR     P RQ K
Sbjct: 351 KEVFKVIKRKPSISYEKHGSVLGKVHGEIKFRRVHFAYPSRQDK 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,624,108
Number of Sequences: 37544
Number of extensions: 151181
Number of successful extensions: 464
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)