Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N16
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    29   0.26 
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    27   1.4  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   4.3  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   7.4  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   7.4  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = +2

Query: 323 YMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGFVDE 460
           +M +S    + +K  +PD    ++G ++G  W++L  +E+  + ++
Sbjct: 23  FMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEK 68


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 323 YMRYSRRVWDSVKAAHPDLKLWEIGRIIGG 412
           Y   S  ++ SVK  +PD ++W  G  +GG
Sbjct: 257 YYSASLDIFYSVKELYPDAQIWLTGHSLGG 286


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 217 CAFSSWISAAENWKRSWGRCWTPKTSQTTRKASNALHALFSSC 345
           CAFS  +S   +W RS  R   P++S     +S +  +   SC
Sbjct: 338 CAFSQCLSKIADWLRSC-RLTKPESSSVPPSSSISRSSTIHSC 379


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 226 SSWISAAENWKRSWGRCWTPKTSQTTRKA 312
           SSW+  +E W     + W P  S++  ++
Sbjct: 625 SSWLRVSEGWWMIGSQYWGPLASESNEES 653


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 225 LILDFSRRKLEKELGQVLDSQNLPN 299
           L+ D   RK+ K LG V+D  ++ N
Sbjct: 548 LVRDSEGRKMSKSLGNVIDPMDIIN 572


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,043
Number of Sequences: 5004
Number of extensions: 29351
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)