Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_N16
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 35 0.037
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 33 0.085
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 31 0.60
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 30 1.0
01_06_0016 - 25590912-25591478 29 1.8
08_01_0133 + 1062365-1063057,1063210-1063318,1063914-1064005,106... 28 4.2
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356... 28 4.2
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964... 27 7.3
02_02_0577 - 11736474-11736609,11736756-11737003,11738002-117380... 27 7.3
02_01_0554 + 4083020-4083854,4083877-4083906,4084843-4084911,408... 27 7.3
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 34.7 bits (76), Expect = 0.037
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 314 LMPYMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGFVDE 460
+ P+M +S ++K +PDL EI + +G MW+ + EK ++ +
Sbjct: 603 MTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQQ 651
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 33.5 bits (73), Expect = 0.085
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +2
Query: 314 LMPYMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGFVDE 460
+ P+M +S+ ++K ++P+L EI + +G W+ + EK +V++
Sbjct: 562 IAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVEQ 610
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 30.7 bits (66), Expect = 0.60
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +2
Query: 323 YMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGF 451
Y+ + + W+ +K PD E+ +G W+ L EK +
Sbjct: 164 YVLWCKDQWNEIKKESPDADFKEVSNALGAKWKALGAEEKQPY 206
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 359 KAAHPDLK-LWEIGRIIGGMWRDLPDSEKSGFVDE 460
+AAHPD K + + + G WR + + EK+ +VD+
Sbjct: 52 QAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPYVDK 86
>01_06_0016 - 25590912-25591478
Length = 188
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +2
Query: 314 LMPYMRYSRRVWDSVK----AAHPDLKLWEIGRIIGGMWRDLPDS 436
L+ RYS+R+W V H D +LWE + I W L S
Sbjct: 94 LVAECRYSKRIWSMVANWVGYLHLDPRLWETTQTIKDWWETLAAS 138
>08_01_0133 +
1062365-1063057,1063210-1063318,1063914-1064005,
1064399-1064560,1064718-1064834,1065029-1065127
Length = 423
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/66 (22%), Positives = 27/66 (40%)
Frame = +1
Query: 220 AFSSWISAAENWKRSWGRCWTPKTSQTTRKASNALHALFSSCMGQC*SSPSRP*IMGDWT 399
+FSSW S++++W+ S +P + +A S P P + W
Sbjct: 133 SFSSWSSSSDSWRSSSSSSSSPPKKKKVVVVESADLETHESVGTAASPPPPPPVALTPWE 192
Query: 400 NYWWNV 417
+W +V
Sbjct: 193 KFWISV 198
>01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,
3560853-3561491,3562154-3562450,3562553-3563407,
3564363-3564545,3565041-3565118,3565762-3565974,
3566075-3566238,3566357-3566445,3566761-3566891,
3566980-3567148,3567255-3567327,3567525-3567606,
3567677-3567808,3568743-3568818,3568965-3569065,
3569446-3569636,3569738-3569912,3570604-3570854,
3571327-3571603,3572184-3572267,3572496-3573206
Length = 1867
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 220 AFSSWISAAENWKRSWGRCWTPKTSQTTRKASNALHALF 336
A SW S NW ++ C K S KAS A +F
Sbjct: 934 ALHSWKSFVSNWMQAVIACLDTKESSKLNKASKAADDIF 972
>03_02_0932 + 12495700-12495738,12495859-12496093,12496178-12496423,
12496519-12496572,12497329-12497589,12497750-12497802,
12497893-12498016,12498147-12498401,12498798-12499888,
12500001-12500007,12500316-12500445,12500617-12500731,
12500783-12500853,12501246-12501354,12501550-12501738,
12502519-12502644,12503048-12503563
Length = 1206
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 332 YSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLP 430
Y +++ DSVK HP+L L GG+ LP
Sbjct: 1085 YLKQIVDSVKETHPELPLILYASGSGGLLERLP 1117
>02_02_0577 -
11736474-11736609,11736756-11737003,11738002-11738087,
11738557-11738633,11738813-11738846,11739922-11740037,
11740121-11740659
Length = 411
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Frame = +1
Query: 109 PQQ---HGPFRCIGRSSRRFCQ 165
PQQ HGP RC R S FCQ
Sbjct: 116 PQQQRVHGPLRCSVRGSGLFCQ 137
>02_01_0554 +
4083020-4083854,4083877-4083906,4084843-4084911,
4085170-4085445,4085601-4085720,4086037-4086044
Length = 445
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 338 RRVWDSVKAAHPDLKLWEIGRIIGGMWR 421
RR W+++ A + ++ WE+ R GG WR
Sbjct: 129 RRRWEALAAEYGVVRRWEV-RGAGGYWR 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,428,174
Number of Sequences: 37544
Number of extensions: 200349
Number of successful extensions: 660
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -