Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_N16
(462 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 69 1e-12
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 33 0.100
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 33 0.100
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 33 0.100
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 33 0.100
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 33 0.13
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 32 0.17
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 32 0.17
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 32 0.17
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 32 0.17
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 32 0.17
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 30 0.70
U28928-9|AAN63431.1| 471|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 29 2.1
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z49868-4|CAA90030.1| 184|Caenorhabditis elegans Hypothetical pr... 28 2.8
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 28 2.8
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 28 2.8
AF042389-1|AAC08940.1| 184|Caenorhabditis elegans FMRFamide-lik... 28 2.8
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca... 27 6.5
Z81458-6|CAB03826.2| 328|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z81040-2|CAB02782.2| 466|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z77656-6|CAB01142.2| 328|Caenorhabditis elegans Hypothetical pr... 27 8.6
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 69.3 bits (162), Expect = 1e-12
Identities = 27/49 (55%), Positives = 37/49 (75%)
Frame = +2
Query: 314 LMPYMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGFVDE 460
L PYMRYSR++W V+A +P+ +LW+IG++IG W DLPD EKS + E
Sbjct: 30 LQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHE 78
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 33.1 bits (72), Expect = 0.100
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 314 LMPYMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEK 442
L + YS+ ++A HPD K+ ++ + +G MW+ +P K
Sbjct: 138 LSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 180
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 33.1 bits (72), Expect = 0.100
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 314 LMPYMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEK 442
L + YS+ ++A HPD K+ ++ + +G MW+ +P K
Sbjct: 137 LSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 179
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 33.1 bits (72), Expect = 0.100
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 314 LMPYMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEK 442
L + YS+ ++A HPD K+ ++ + +G MW+ +P K
Sbjct: 139 LSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 33.1 bits (72), Expect = 0.100
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 314 LMPYMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEK 442
L + YS+ ++A HPD K+ ++ + +G MW+ +P K
Sbjct: 139 LSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 32.7 bits (71), Expect = 0.13
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 323 YMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGFVDE 460
+M +S+ + PD+ EI + +G WR L D EK+ FV E
Sbjct: 100 FMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAE 145
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 323 YMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGFVDE 460
+M ++R + A+PD+ I +I+G W+ + +SEK + +E
Sbjct: 185 FMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEE 230
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 323 YMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGFVDE 460
+M ++R + A+PD+ I +I+G W+ + +SEK + +E
Sbjct: 182 FMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEE 227
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 323 YMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGFVDE 460
+M ++R + A+PD+ I +I+G W+ + +SEK + +E
Sbjct: 288 FMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEE 333
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 323 YMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGFVDE 460
+M ++R + A+PD+ I +I+G W+ + +SEK + +E
Sbjct: 336 FMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEE 381
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 323 YMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGFVDE 460
+M ++R + A+PD+ I +I+G W+ + +SEK + +E
Sbjct: 336 FMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEE 381
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 30.3 bits (65), Expect = 0.70
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 323 YMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGFVDE 460
+M +SR + +P + EI + +G W+ L + EK F+DE
Sbjct: 55 FMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEKRPFIDE 100
>U28928-9|AAN63431.1| 471|Caenorhabditis elegans Hypothetical
protein C44B7.10 protein.
Length = 471
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -3
Query: 178 LSRLTGRSGATSALCSETAHV 116
LSRLT RS TSA CS TA +
Sbjct: 2 LSRLTSRSLGTSAACSRTAGI 22
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 323 YMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGF 451
Y+ +S V + +PD E+ +I+G W+ L + +K +
Sbjct: 1456 YILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHY 1498
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 323 YMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGF 451
Y+ +S V + +PD E+ +I+G W+ L + +K +
Sbjct: 1456 YILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHY 1498
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 323 YMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPDSEKSGF 451
Y+ +S V + +PD E+ +I+G W+ L + +K +
Sbjct: 86 YILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHY 128
>Z49868-4|CAA90030.1| 184|Caenorhabditis elegans Hypothetical
protein W07E11.2 protein.
Length = 184
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 294 PNHQKSL*CLTCAILVVY-GTVLKQPIQTLNYGR 392
PNH L C+ CA LV T + P+ T+ +G+
Sbjct: 4 PNHLILLFCVNCAFLVASDATPKRSPLGTMRFGK 37
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 323 KALEAFLVVWEVLGVQHLPQLLFQFS 246
KALE + ++E+LG LP+ L+ F+
Sbjct: 87 KALETYRQIFEILGPNKLPECLYLFA 112
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 323 KALEAFLVVWEVLGVQHLPQLLFQFS 246
KALE + ++E+LG LP+ L+ F+
Sbjct: 87 KALETYRQIFEILGPNKLPECLYLFA 112
>AF042389-1|AAC08940.1| 184|Caenorhabditis elegans FMRFamide-like
peptide 3 protein.
Length = 184
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 294 PNHQKSL*CLTCAILVVY-GTVLKQPIQTLNYGR 392
PNH L C+ CA LV T + P+ T+ +G+
Sbjct: 4 PNHLILLFCVNCAFLVASDATPKRSPLGTMRFGK 37
>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
protein 4 protein.
Length = 2325
Score = 27.1 bits (57), Expect = 6.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -2
Query: 170 ADWQKRRDERPMQRNGPCCW 111
+DW D P + PCCW
Sbjct: 693 SDWTTAIDNIPKEEGKPCCW 712
>Z81458-6|CAB03826.2| 328|Caenorhabditis elegans Hypothetical
protein F07B10.3 protein.
Length = 328
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 205 LRIYCAFSSWISAAENWKRSWGRCWTPKTSQTTRKASNALHALFSS 342
L + C F +W+ + SWG QT R LH ++SS
Sbjct: 127 LFVGCHFYAWVVLILSLATSWGLTAAFMFPQTDRTTEIFLHIIYSS 172
>Z81040-2|CAB02782.2| 466|Caenorhabditis elegans Hypothetical
protein C26E1.2 protein.
Length = 466
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 388 P*FKVWMGCFNTVPYTTRIAH 326
P F +MGC NTVP+ H
Sbjct: 297 PHFNPYMGCMNTVPFVPLNTH 317
>Z77656-6|CAB01142.2| 328|Caenorhabditis elegans Hypothetical
protein F07B10.3 protein.
Length = 328
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 205 LRIYCAFSSWISAAENWKRSWGRCWTPKTSQTTRKASNALHALFSS 342
L + C F +W+ + SWG QT R LH ++SS
Sbjct: 127 LFVGCHFYAWVVLILSLATSWGLTAAFMFPQTDRTTEIFLHIIYSS 172
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,275,600
Number of Sequences: 27780
Number of extensions: 160501
Number of successful extensions: 494
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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