Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N14
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    28   0.97 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.7  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   2.2  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    25   5.2  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   5.2  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   5.2  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    25   6.8  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   9.0  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 315 DEAIRILTDHLCTDEVLCNITNLIDEPESVRGMC--DVWRSYLAANMSLGCYIQQDG 479
           D+   IL+++L T + + N T  I +  SV+ +   D+W+   AA+  +  YI+  G
Sbjct: 3   DDTAYILSEYLQTLDNVPNETKHIFDEISVKEVAVHDIWKRIQAADSQIQSYIKSHG 59


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +3

Query: 201 NQKMSFTRVLDESYPHIYDKWQQGGEMWVIQDLPPEDHDEAIRILTD 341
           N ++     LDE   HI   W +      I  LPP   DE   I+ D
Sbjct: 56  NCQIDNLHTLDERKSHIKSDWHRFNTKRKITKLPPVSQDEFESIIED 102


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 234  ESYPHIYDKWQQGGEMWVIQDLPPEDHDEAIRIL 335
            +SY    D W   G++ V+++L P+  +E  RIL
Sbjct: 911  QSYTLKDDPWMDSGKIRVLKELLPKMKEEGSRIL 944


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 256 INGSKVVKCGSSRTYLRKTMTKPSEF*RTTCAQMKSSAI 372
           +NGS    C ++ ++L +T++   EF   TC+    S++
Sbjct: 302 VNGSPDSHCFNADSFLDQTLSDDYEFGLITCSDSNESSM 340


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 225 VLDESYPHIYDKWQQGGEMWVIQDLPPEDHDEAIRILTDHLCTDE 359
           V DE Y    D W  G  ++ I    P  +DE+I +LT  +   E
Sbjct: 335 VRDERYSKGVDMWALGCVLYTILCGFPPFYDESISLLTKKVSRGE 379


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 409 PRTLSGSSMRFVILQRTSSVHRWSVKILMASSWSSGGRSWMTHISPPC 266
           P  +  S +  + +   S +  W V  L+A+ W+ G  SW +  S  C
Sbjct: 60  PGAVKRSFIPSLFIAVLSYIPSWFVNPLLAARWTIGYLSWESMNSVSC 107


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 400 LSGSSMRFVILQRTSSVHRWSVKILMASSWS 308
           +  S+ R + LQR S +  W ++ +++ S+S
Sbjct: 150 VDSSTSRILSLQRGSQIRVWKIRFIISISFS 180


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +3

Query: 282 WVIQD--LPPEDHDEAIRILTDHLCTDEVL 365
           +++QD  +P +D DE ++ L ++  TDE++
Sbjct: 513 FILQDPAVPIKDRDEIVKALKENSFTDELI 542


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 412 IPRTLSGSSMRFVILQRTSSVHRWSVKILMASSWSSGG 299
           + + L GSS    I Q  + V  W +KI+M   +S  G
Sbjct: 554 LQKLLIGSSQCEAIYQIGTLVESWMIKIVMTHQFSVRG 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,675
Number of Sequences: 5004
Number of extensions: 47065
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)