Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N14
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458...    29   2.3  
12_01_0668 - 5682664-5682916,5684542-5684576,5684643-5684693,568...    29   3.0  
01_05_0720 - 24588623-24588658,24588888-24589196,24589449-245913...    29   3.0  
01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553     28   4.0  
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    27   6.9  
03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835     27   9.1  
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110...    27   9.1  

>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
            34045969-34046092,34046168-34046294,34046821-34046882,
            34046972-34048023,34048167-34048556,34048667-34052628,
            34052710-34052796,34052885-34053004,34053096-34053152
          Length = 2122

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 294  DLPPEDHDEAIRILTDHLCTDEVLCNITNLIDEPESVRGMCDVWRSYLAANMSLGC 461
            D   ED+      +T  +C+D    + + L+ E E++  + D +   L +  S GC
Sbjct: 1875 DASCEDNKLKNHFITSEVCSDATNLSASGLLTEEENIHNVEDQYEGPLPSEESSGC 1930


>12_01_0668 -
           5682664-5682916,5684542-5684576,5684643-5684693,
           5685362-5685505,5685981-5686265,5686369-5686441,
           5687123-5687343,5687447-5687524,5687626-5687688,
           5688700-5688900
          Length = 467

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 432 YLAANMSLGCYIQQDGVKRLVALNVCYVAC 521
           +L +  +  CYI Q  +KRL  +  C +AC
Sbjct: 393 WLTSGSNCHCYISQQEIKRLSCMAKCALAC 422


>01_05_0720 -
           24588623-24588658,24588888-24589196,24589449-24591366,
           24591412-24591693,24592027-24592328
          Length = 948

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 180 ILRRYTKNQKMSFTRVLDESYPHIYDKWQQGG 275
           +LRR+   +    TR +D  Y H YD W + G
Sbjct: 396 LLRRWLARRCKLGTRSVDLYYEHAYDAWMEDG 427


>01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553
          Length = 362

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -3

Query: 418 SHIPRTLSGSSMRFVILQRTSSVHRWSVKILMASSWSSGGRS 293
           +H+   L+G+++  ++L   +S  R S K+ + SSW SGG S
Sbjct: 7   NHVVSFLAGAALPTLLLFFLAS-DRVSEKLAIVSSWGSGGSS 47


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 385 MRFVILQRTSSV-HRWSVKILMASSWSSGGRS 293
           M + +L + +S  H W +K+ +A SW   G S
Sbjct: 1   MEYSLLSQINSTRHNWRIKVRVARSWHLSGTS 32


>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
          Length = 379

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 345 LCTDEVLCNITNLIDEPESVRGMCDVWRSYLAA 443
           +CT    C +  L  +   +RG+ DVWR+Y AA
Sbjct: 328 ICTLHANCCV-GLGAKMHDLRGVLDVWRNYTAA 359


>03_05_0941 +
           29008322-29009686,29009929-29010012,29010889-29011052,
           29011208-29011233,29011494-29011583,29012135-29012229,
           29012328-29012495
          Length = 663

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 357 EVLCNITNLIDEPESVRG--MCDVWRSYLAANMSLGCY 464
           ++L  I  L++ P+ VR   +C+ WRS      SLG Y
Sbjct: 68  DILMEIFALLEIPDLVRAGSVCNSWRSAYNGMRSLGIY 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,858,035
Number of Sequences: 37544
Number of extensions: 307332
Number of successful extensions: 545
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)