Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_N14
(522 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41995-1|AAA83459.1| 301|Caenorhabditis elegans Serpentine rece... 29 1.5
AF036688-8|AAB88314.2| 482|Caenorhabditis elegans Hypothetical ... 29 2.0
Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical pr... 28 4.7
AC024751-4|AAK21505.1| 425|Caenorhabditis elegans Hypothetical ... 28 4.7
Z78065-9|CAI79172.1| 273|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z78064-11|CAI79210.1| 273|Caenorhabditis elegans Hypothetical p... 27 6.2
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 27 8.1
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 8.1
>U41995-1|AAA83459.1| 301|Caenorhabditis elegans Serpentine
receptor, class x protein47 protein.
Length = 301
Score = 29.5 bits (63), Expect = 1.5
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Frame = -3
Query: 388 SMRFVI-LQRTSSVHRWSVKILMASS-----WSSGGRSWMTHISPPCCHLS---*ICGYD 236
S RF I + T++++ ++ I++ +S WSS +M H+S C + S C Y
Sbjct: 116 SQRFTIGMLFTANMYAFASIIVLYTSGCRYFWSSELHMFMYHVSNSCVNFSFYGIFCKYL 175
Query: 235 SSSTLVKLIF*FLVYRLRILTEHT 164
+ L+ LI F +Y+ R+ + T
Sbjct: 176 TIIILILLIDLFSIYKARLFLQKT 199
>AF036688-8|AAB88314.2| 482|Caenorhabditis elegans Hypothetical
protein C24D10.1 protein.
Length = 482
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 234 ESYPHIYDKWQQGGEMWVIQDLPPEDHDEAIRILTD---HLCTDEVLCNIT 377
E +P + ++ G+MW+ DE R + H C++ ++CN+T
Sbjct: 282 EFFPKKAEDYKNYGQMWINNRKVEHVIDEVFRFSIEVLPHGCSNSIICNVT 332
>Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical
protein Y57G11C.6 protein.
Length = 482
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 234 ESYPHIYDKWQQGGEMWVIQDLPPEDHDEAIRILTD---HLCTDEVLCNIT 377
E +P + ++ G+MW+ D+ R + H C++ ++CN+T
Sbjct: 282 EFFPKKAEDYKNYGQMWINNRKVEYVSDDVFRFSIEVLPHGCSNSIICNVT 332
>AC024751-4|AAK21505.1| 425|Caenorhabditis elegans Hypothetical
protein Y18H1A.1 protein.
Length = 425
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 234 ESYPHIYDKWQQGGEMWVIQDLPPEDHDEAIRILTD---HLCTDEVLCNIT 377
E +P + + G+MW+ +D+ R + H C++ ++CN+T
Sbjct: 225 EFFPKKAEDYTNYGQMWINNRRVEYVNDDVYRFAIEVVPHGCSNSIICNVT 275
>Z78065-9|CAI79172.1| 273|Caenorhabditis elegans Hypothetical
protein F57B1.8 protein.
Length = 273
Score = 27.5 bits (58), Expect = 6.2
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = -2
Query: 320 FVMVFRR*VLDDPHFTTLLPFIVDMRVR---FIQYSCETHFLIFSISP*NFN-RTHGFFL 153
FVM F +++ P TL I + V+ F SC F SI N H F+
Sbjct: 65 FVMSFLNVLINVP--ATLFAMITESFVQSAPFFYMSCIIDFCHNSILFSNLTIAIHRMFV 122
Query: 152 SLFARYASRIKNKFISYINI 93
LFA+ ++ NK++ + I
Sbjct: 123 FLFAKATGKVFNKYVESLTI 142
>Z78064-11|CAI79210.1| 273|Caenorhabditis elegans Hypothetical
protein F57B1.8 protein.
Length = 273
Score = 27.5 bits (58), Expect = 6.2
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = -2
Query: 320 FVMVFRR*VLDDPHFTTLLPFIVDMRVR---FIQYSCETHFLIFSISP*NFN-RTHGFFL 153
FVM F +++ P TL I + V+ F SC F SI N H F+
Sbjct: 65 FVMSFLNVLINVP--ATLFAMITESFVQSAPFFYMSCIIDFCHNSILFSNLTIAIHRMFV 122
Query: 152 SLFARYASRIKNKFISYINI 93
LFA+ ++ NK++ + I
Sbjct: 123 FLFAKATGKVFNKYVESLTI 142
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = -3
Query: 451 LMLAAK*ERHTSHIPRTLSGSSMRFVILQRTSSVHRWSVKILMASSWS 308
L L A E + T G S R ILQ+T SV +K ASS S
Sbjct: 1495 LKLRASQEEVCTGFWNTSKGESTRRTILQKTKSVESMCLKTKSASSTS 1542
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = -3
Query: 451 LMLAAK*ERHTSHIPRTLSGSSMRFVILQRTSSVHRWSVKILMASSWS 308
L L A E + T G S R ILQ+T SV +K ASS S
Sbjct: 1495 LKLRASQEEVCTGFWNTSKGESTRRTILQKTKSVESMCLKTKSASSTS 1542
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,100,508
Number of Sequences: 27780
Number of extensions: 272887
Number of successful extensions: 588
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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