Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N12
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   2.6  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   4.5  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   6.0  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   6.0  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.9  
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.9  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   7.9  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   7.9  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   7.9  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 322 CLYFINAYYLLIGNYQYFIVLYSFFFITTVYI 227
           CL+ IN   +L+G   YF   YS F+ +  YI
Sbjct: 169 CLFVINHILILLG---YFQCSYSVFYASVFYI 197


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 373 WWRIYNRMNKRHTGTLRCLYFINAYYLLIGNYQYFIV 263
           WWR Y +MN      + C  +    ++++ +Y  F+V
Sbjct: 189 WWRDYVKMNHAFADKI-CEIYKPGDFIIVQDYSLFLV 224


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 488  NYVCAPFFVIIYICFHILKKE 550
            NY C  F  I+Y C+H+L+ +
Sbjct: 1557 NYEC--FAAILYTCYHLLRND 1575


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 374 LDEESDNASADNYGDDYDEDEF 439
           L+E SD +  DNYG++ D+D +
Sbjct: 18  LEEYSDYSDVDNYGEE-DDDSY 38


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 290 KKIVSINKIQTPQRAGVAF-VHPVVYSPPLDEESDNASADNYGDDYDEDEFNYPNEFI 460
           KK +S+  + T + A  A  V   V   P DEES+N   +N     D DE + P+  I
Sbjct: 46  KKKISLPNVMTSKAAMFAARVASAVDQDPNDEESENFVYENLIPTND-DELHSPSASI 102


>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -2

Query: 392 YHFPRLMVENIQQDEQTPHRHVAVFVFY*CLLSSYRELPVFHSSLQLFLHYHSVYNTRYV 213
           + FP L + +  +D+ T   H          + +Y+ +PVF   L     Y   + TRY 
Sbjct: 40  WRFPSLRIHSYPKDQST---HAWKMHCMPTEIIAYQPIPVFQRLLHSNDIYFPYFQTRYT 96

Query: 212 KVELF 198
            + +F
Sbjct: 97  TLIMF 101


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +2

Query: 44  TTFEVLCGFDYMWVPTKGDKVPVTAMEAGYSEVNRERLYVGRAYYNGSVIPGKVQPSHNV 223
           T F +LCG D  W+        +T ++ G  E   ++ +  +  Y   V P   Q S   
Sbjct: 447 TVFNLLCGSDTTWIINFFKSEKLTEIKIGKWEKIDDK-WNRKVQYIKPVAPPYRQTS--- 502

Query: 224 CYIHCGNEEKAVENY-EIL 277
           CYI    +   + NY EIL
Sbjct: 503 CYITDTIQHLDINNYIEIL 521


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +2

Query: 281 VPDKKIVSINKIQTPQRAGVAFVHPVVYSPPLDEESDNASADNYG----DDYDEDEFN 442
           +PD    S + + +   +  +F +  +Y P    ES N   DN+     DD+D D  N
Sbjct: 3   IPDSTTDSRHSLSSAALSSASFEN--IYDPARKNESTNDVIDNHTDTEIDDHDNDHEN 58


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 200 KVQPSHNVC-YIHCGNEEKAVENYEI 274
           KV PS  +  YIH G+ +K +++YE+
Sbjct: 322 KVHPSKKLSVYIHHGSTKKNLDSYEL 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,339
Number of Sequences: 5004
Number of extensions: 51350
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)