Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N12
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407...    30   1.5  
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558...    30   1.5  
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592...    28   6.1  
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009...    27   8.0  

>04_04_1135 +
           31140032-31140043,31140552-31140592,31140680-31140780,
           31141113-31141419,31141565-31141661
          Length = 185

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 355 RMNKRHTGTLRCLYFINAYYLLIGNYQYFIVLYSFFF 245
           +MN+        L+F+  Y   + NY +++  +SFFF
Sbjct: 80  KMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCFFSFFF 116


>04_04_0483 -
           25554531-25554605,25554681-25555644,25555722-25555847,
           25556162-25556331,25556431-25556526
          Length = 476

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 377 DEESDNASADNYGDDYDEDEFNY 445
           +EE +    DNYGDD DE+E ++
Sbjct: 202 EEEDEYGEDDNYGDDSDEEEEDF 224


>09_04_0042 -
           14055885-14056142,14057508-14057774,14057859-14059292,
           14059378-14059539,14059642-14059768,14059869-14060200,
           14060289-14061083,14061379-14061714,14061791-14062730,
           14063338-14063588
          Length = 1633

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 338 VAFVHPVVYSPPLDEESDNASADNYGDDYDEDEFNYPNEFI 460
           V F   + Y PP ++ESD+  +     D ++DE+   + F+
Sbjct: 176 VDFDDDIWYPPPPEDESDDVESKLCAFDDEDDEYGDSSNFV 216


>05_04_0309 -
           20100231-20100307,20100362-20100503,20100588-20100967,
           20101049-20101076,20101182-20101306,20101402-20101457,
           20101709-20101791,20101881-20101949,20102050-20102640
          Length = 516

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 377 DEESDNASADNYGDDYDEDE 436
           DE    A+A NYG +YD+D+
Sbjct: 121 DERLRRAAASNYGHNYDDDD 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,265,975
Number of Sequences: 37544
Number of extensions: 295720
Number of successful extensions: 873
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)