Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N12
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   3.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 374 LDEESDNASADNYGDDYDEDEFNYP 448
           +  E  +A AD  GDD   DE  YP
Sbjct: 679 IKRELVDAPADQEGDDDQVDEREYP 703


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 383 ESDNASADNYGDDYDEDEFN 442
           +S N  +++   DYDE EFN
Sbjct: 545 DSANTISNSSLQDYDETEFN 564


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +2

Query: 308 NKIQTPQR--AGVAFVHPVVYSPPLDEESDNASADNYGDDYDEDEFNYPN 451
           NK+ T  +  A   +V P      LD++      +NY D+Y   + N  N
Sbjct: 102 NKMSTRGKRPASPGYVQPPTKHQKLDQKFIFPQENNYNDNYFYSKSNGSN 151


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 44  TTFEVLCGFDYMWVP 88
           TT+  +C +D+ W P
Sbjct: 153 TTYTPVCEYDHTWWP 167


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 129 VTLKSTANVYMLEEPIIMEVLYLEKFNLHITCVIYTVV 242
           VTL+S   V  L+ P     + +     HIT ++  VV
Sbjct: 187 VTLESGERVTFLDTPGHAAFISMRHRGAHITDIVVLVV 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,013
Number of Sequences: 438
Number of extensions: 3846
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)