Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N11
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    28   0.93 
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    27   1.6  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    27   2.1  
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    25   6.5  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   6.5  

>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 559 LYTRCAHTFCTFIIR 515
           L T C+HTFC+F IR
Sbjct: 40  LITSCSHTFCSFCIR 54


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 44  EEAVNRPS-TKLHPDPHKAANNYL 112
           +E V  PS TK HP+ H+++ NYL
Sbjct: 284 DELVKNPSVTKGHPEIHESSENYL 307


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 600 HLNLL*LIKGHTQNYIHVVHTRFV 529
           HLN L  + GH +N++   ++RFV
Sbjct: 61  HLNKLRTVHGHARNFVKADNSRFV 84


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 310 KAWAKKVAYESVHLHLIDPHSSDIFLMASQF 218
           ++WAKK+  E  H++    ++  I+ M+  F
Sbjct: 223 ESWAKKITPEDAHVNFESMNTQQIYNMSRAF 253


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 75 SFVEGRLTASSRSNRRQGVSWWASC 1
          S VEGR+  S R N + G + +A C
Sbjct: 17 SSVEGRVRYSKRPNHKLGTAEYAEC 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,569
Number of Sequences: 5004
Number of extensions: 51527
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)