Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N11
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549...    29   2.2  
07_03_0288 + 16285485-16285721,16285811-16286184,16286499-162868...    28   5.0  
11_08_0048 - 28022335-28022520,28022607-28022699,28022804-280228...    28   6.7  
06_01_0243 - 1837830-1837886,1837969-1838016,1838113-1838255,183...    28   6.7  
04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493...    28   6.7  
11_03_0142 + 10675764-10675991,10676533-10676943                       27   8.8  

>07_03_0635 + 20151861-20152249,20152589-20152709,20154914-20154996,
            20155819-20155903,20155987-20156277,20156555-20156645,
            20157380-20158280,20158401-20158561,20158759-20158862,
            20159040-20159205,20159283-20159378,20159694-20159800,
            20160443-20160775,20161393-20161599,20161774-20161857,
            20162887-20163020,20163166-20163393,20163541-20163712,
            20164301-20164555,20164647-20164919
          Length = 1426

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +1

Query: 259  LLDGDEQIHMQLSLPTP--LDAATQTKRKKNFMDRCV-NKVRLF*SKW 393
            L   ++++  QLS+P P   D +  TK  +NF+++CV N  + F S W
Sbjct: 1116 LYRSNQELIKQLSVPPPGFQDLSFPTKYSQNFLNQCVANTWKQFQSYW 1163


>07_03_0288 +
           16285485-16285721,16285811-16286184,16286499-16286892,
           16286917-16287806,16291189-16291446,16291518-16291628,
           16291697-16291775,16291880-16291972,16292095-16292280
          Length = 873

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 152 QRNHCTVYPRDYPRAVIRSIRTKLRSHQED 241
           +R HC   P DY + V+R++    R H+ D
Sbjct: 358 RRFHCQDIPDDYVKVVVRTVIEAYRMHELD 387


>11_08_0048 -
           28022335-28022520,28022607-28022699,28022804-28022882,
           28022951-28023061,28023133-28023390,28023468-28023970,
           28024094-28024729,28024778-28025116
          Length = 734

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 119 VAVIAHRRMHLQRNHCTVYPRDYPRAVIRSIRTKLRSHQED 241
           + V   R +   R HC   P DY +  +R++    R H+ D
Sbjct: 185 ILVATRRFISGHRFHCQDIPNDYAKVEVRTVIEAYRMHELD 225


>06_01_0243 -
           1837830-1837886,1837969-1838016,1838113-1838255,
           1838784-1838982,1839085-1839265,1839857-1840228,
           1841453-1841658
          Length = 401

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/30 (53%), Positives = 16/30 (53%)
 Frame = +1

Query: 187 SESSDKIDSNEIEKPSRRCRSCEGLLDGDE 276
           SES D  D  E  K SR  R  EGL D DE
Sbjct: 361 SESDDDEDEEEEVKASRIRRMIEGLDDSDE 390


>04_03_0520 -
           16748646-16748741,16748821-16748895,16749260-16749362,
           16749635-16749783,16750986-16751110,16751320-16751389
          Length = 205

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +1

Query: 175 PERLSESSDKIDSNEIEKPSRRCRSCEGLLDGDEQIHMQLSLPTPLDAATQTKR 336
           PE        ++  E  +P +R R         +++H+Q+ LP+   + + TK+
Sbjct: 138 PEDYIADCYSVEVQECSRPQKRFRPSVAAGTSQQKVHVQIDLPSQSSSLSITKK 191


>11_03_0142 + 10675764-10675991,10676533-10676943
          Length = 212

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 307 AWAKKVAYESVHLHLIDPHSSDIFLMASQFRSNRSYHCSR 188
           AW + V++ S+ LHL DP   D +       S R Y+ +R
Sbjct: 47  AWEEAVSHASLDLHLNDPLPMD-WEQCLDLHSGRMYYLNR 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,103,088
Number of Sequences: 37544
Number of extensions: 320821
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)