Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_N10
(365 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 144 3e-36
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 144 4e-36
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 32 0.024
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 31 0.056
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 27 0.69
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 27 0.69
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 24 6.4
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 24 6.4
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 24 8.5
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 24 8.5
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 24 8.5
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 144 bits (350), Expect = 3e-36
Identities = 69/118 (58%), Positives = 87/118 (73%)
Frame = +3
Query: 12 DVDVEVPANPVLSGGAMDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAEN 191
+V+VE A +S V AL+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+
Sbjct: 16 EVEVEAAAPETVS-----VEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCES 70
Query: 192 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKD 365
CD+ AY KLV+ALC E + PL+KV + K LGEWAGLC +D+DG ARK+VGCSCV + D
Sbjct: 71 CDQEAYVKLVEALCAESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTD 128
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 144 bits (349), Expect = 4e-36
Identities = 65/102 (63%), Positives = 80/102 (78%)
Frame = +3
Query: 60 MDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 239
+ V +L+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 30 LSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 89
Query: 240 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKD 365
Q PLVKV + K LGEWAGLC +D+DG ARK+VGCSCV + D
Sbjct: 90 SQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTD 131
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 32.3 bits (70), Expect = 0.024
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +3
Query: 66 VNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 245
+N + + +K A ++ G+ E KA+ K + L +LA + + LC ++
Sbjct: 37 LNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNN 96
Query: 246 IPLVKVDNNKKLGE 287
+P + + + LGE
Sbjct: 97 VPYLYTVSKELLGE 110
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 31.1 bits (67), Expect = 0.056
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 123 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 284
+GL+ ++ ++A L ++A + D + ALC + +P V N +LG
Sbjct: 134 YGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.5 bits (58), Expect = 0.69
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 324 PCRLCRFYRDRPIRRASYCYRP 259
PC LC F R +P+R+ + RP
Sbjct: 441 PCSLCGFNRTQPLRQFEFRSRP 462
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 27.5 bits (58), Expect = 0.69
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 6 RADVDVEVPANPVLSGGAMDVNTALQEVLKTALIHGGLVHGLH 134
R + +E+ P LS A D + + VL L+HGG +HG H
Sbjct: 440 RHEFPLEIDLEPYLSETA-DKSESHVYVLHGVLVHGGDLHGGH 481
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 24.2 bits (50), Expect = 6.4
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 102 LIHGGLVHGLHEAAKALDKRQAVLCVLAEN-CDE 200
L+H GL+H L + K +LA N CDE
Sbjct: 896 LLHSGLIHNLLLSLKKFGSSSLRTFLLAMNTCDE 929
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 6.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 253 LLRSITIRSSANGPVSVKSTKTARLGKSSV 342
L+R++ ++SANG V V GKSS+
Sbjct: 132 LIRTLVDQASANGRVYVYFVGMPNTGKSSI 161
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 23.8 bits (49), Expect = 8.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 255 VKVDNNKKLGEWAGLCKIDKDGKARKIVG 341
V+ +N +K EWAGL ID + VG
Sbjct: 527 VRKENKRKAQEWAGL-TIDDEADLLVFVG 554
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 356 NYARATDDFPSLAVFVD 306
NYA+ DD SL+ F+D
Sbjct: 92 NYAKNIDDLTSLSAFMD 108
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 23.8 bits (49), Expect = 8.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 339 RRFS*PCRLCRFYRDRP 289
RRF PCR +++D P
Sbjct: 15 RRFCGPCRRLHYHKDNP 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,831
Number of Sequences: 5004
Number of extensions: 27528
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -