Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_N10
(365 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 136 3e-33
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 35 0.020
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 35 0.020
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 35 0.020
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 29 1.0
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 29 1.0
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 29 1.3
U39741-3|AAA80430.1| 163|Caenorhabditis elegans Hypothetical pr... 29 1.3
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 1.8
AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical ... 28 1.8
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 27 4.1
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p... 27 5.4
Z68493-1|CAA92789.1| 150|Caenorhabditis elegans Hypothetical pr... 27 5.4
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 27 5.4
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ... 27 5.4
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ... 27 5.4
AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical... 27 5.4
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 26 7.2
U55856-5|AAA98023.1| 441|Caenorhabditis elegans Synaptotagmin p... 26 9.5
U55856-4|AAK68354.1| 443|Caenorhabditis elegans Synaptotagmin p... 26 9.5
L15302-1|AAA28145.1| 441|Caenorhabditis elegans synaptotagmin I... 26 9.5
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 136 bits (330), Expect = 3e-33
Identities = 67/114 (58%), Positives = 81/114 (71%)
Frame = +3
Query: 18 DVEVPANPVLSGGAMDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCD 197
DV+V A ++ G MD AL+ VL+ A GL GLHE KALDKR+A CVLAENCD
Sbjct: 7 DVQV-APAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCD 65
Query: 198 EAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVI 359
E Y KLV+ LC EHQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS V+
Sbjct: 66 EPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVV 119
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 34.7 bits (76), Expect = 0.020
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +3
Query: 117 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 284
L G+ + K L + + +C+LA N + +C E +IP V + + ++LG
Sbjct: 69 LREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 34.7 bits (76), Expect = 0.020
Identities = 11/61 (18%), Positives = 28/61 (45%)
Frame = +1
Query: 151 WTRGKLSYVYWLRTVTRQPTKSLFRLSVMNIKSHLLRSITIRSSANGPVSVKSTKTARLG 330
W + + S+ +W R + P+K + + V + +H+ ++ P+ K + +G
Sbjct: 87 WPKNRHSFYFWARRPYKMPSKKVIKKKVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIG 146
Query: 331 K 333
+
Sbjct: 147 Q 147
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 34.7 bits (76), Expect = 0.020
Identities = 11/61 (18%), Positives = 28/61 (45%)
Frame = +1
Query: 151 WTRGKLSYVYWLRTVTRQPTKSLFRLSVMNIKSHLLRSITIRSSANGPVSVKSTKTARLG 330
W + + S+ +W R + P+K + + V + +H+ ++ P+ K + +G
Sbjct: 87 WPKNRHSFYFWARRPYKMPSKKVIKKKVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIG 146
Query: 331 K 333
+
Sbjct: 147 Q 147
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +3
Query: 123 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 284
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 139 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +3
Query: 123 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 284
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 119 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 234 NEHQIPLVKVDNNKKLGEWAGLCK 305
N++Q+ + V+NNKK+ +W G K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368
>U39741-3|AAA80430.1| 163|Caenorhabditis elegans Hypothetical
protein F12D9.2 protein.
Length = 163
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +3
Query: 63 DVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQ 224
D+NT++ LKT + G L A +AL KR L +L D A KK+ Q
Sbjct: 54 DLNTSIINWLKTGIEEGDLEGAAQRAIEALRKRNEELKLL--EMDPNAMKKVEQ 105
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.3 bits (60), Expect = 1.8
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 135 EAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGL 299
E KALD+ Q ++ VL + CD A K ++++ EH + N + L E AG+
Sbjct: 3504 EEDKALDQIQVLVDVLKQ-CDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGI 3557
>AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.9 protein.
Length = 448
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 111 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKL 218
GGLV G+ A KAL V+ V++E C +A K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 27.1 bits (57), Expect = 4.1
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 154 TRGKLSYVYWLRTVTRQPTKSLFRLSVMNIKSHLLRSITIRSSANGPVSV 303
T G + + RTV + F +++ N+KSHL SI SANG V +
Sbjct: 1300 TDGFIPPISDFRTVINTTSSGSFVVNLRNLKSHLALSI----SANGYVQI 1345
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 27.1 bits (57), Expect = 4.1
Identities = 18/71 (25%), Positives = 39/71 (54%)
Frame = +3
Query: 66 VNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 245
+++A++ + + L +VH + A K ++ + V+ ++ E + KKLV+ L ++ Q
Sbjct: 518 MSSAIERLARQYLRRPAVVH-IGSAGKPTERVEQVVYMVPE---DRKRKKLVEVLESQFQ 573
Query: 246 IPLVKVDNNKK 278
P++ N KK
Sbjct: 574 PPIIIFVNQKK 584
>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +3
Query: 192 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 317
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>Z68493-1|CAA92789.1| 150|Caenorhabditis elegans Hypothetical
protein C33A12.1 protein.
Length = 150
Score = 26.6 bits (56), Expect = 5.4
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +3
Query: 168 VLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNN-KKLGEWAGLCKIDK 314
+L L + +AAY+K +A+ + ++ LV+ +N+ KKL E G+ +I++
Sbjct: 65 ILRALEQIPRDAAYRKYTEAVVKQ-RLALVQAENDIKKLEEKIGMGQIEE 113
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 187 RTVTRQPTKSLFRLSVMNIKSHLLRSITIRSSANGPVSVKSTKTARLG 330
R T P ++ ++++ + RS IR N P VK TKT +G
Sbjct: 1566 RKSTNPPDENCSKVNIDELTDKEYRSY-IRRCPNNPTGVKITKTVEVG 1612
>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +3
Query: 192 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 317
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +3
Query: 192 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 317
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical
protein F25G6.1 protein.
Length = 560
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 39 PVLSGGAMDVNTALQEVLKTALIHGGLVHGLHEAAKAL 152
PV +G + E+L+T +I +HG EAAKAL
Sbjct: 122 PVDNGKKKRLTAKECEILRTMVIPHRNIHGAMEAAKAL 159
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 66 VNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAY 209
V AL + T LIH +H L++ K L V C+L ++ +A Y
Sbjct: 16 VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMY 62
>U55856-5|AAA98023.1| 441|Caenorhabditis elegans Synaptotagmin
protein 1, isoform a protein.
Length = 441
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 246 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 362
IPL K+D + EW + D +A K +G C ++
Sbjct: 263 IPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSLR 301
>U55856-4|AAK68354.1| 443|Caenorhabditis elegans Synaptotagmin
protein 1, isoform b protein.
Length = 443
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 246 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 362
IPL K+D + EW + D +A K +G C ++
Sbjct: 263 IPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSLR 301
>L15302-1|AAA28145.1| 441|Caenorhabditis elegans synaptotagmin I
protein.
Length = 441
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 246 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 362
IPL K+D + EW + D +A K +G C ++
Sbjct: 263 IPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSLR 301
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,305,610
Number of Sequences: 27780
Number of extensions: 166731
Number of successful extensions: 523
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -