Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_N08
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 51 1e-07
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 35 0.010
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.010
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 31 0.092
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 31 0.092
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.12
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 31 0.12
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 31 0.16
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 30 0.21
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 30 0.21
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 30 0.21
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 29 0.65
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 29 0.65
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 29 0.65
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 29 0.65
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 28 0.86
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 28 0.86
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 28 1.1
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 27 2.0
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 27 2.6
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 27 2.6
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 4.6
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.6
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 25 6.1
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 8.0
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 25 8.0
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.0
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 25 8.0
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 8.0
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 51.2 bits (117), Expect = 1e-07
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Frame = +3
Query: 156 IPDEELLADLLEQKPKESD--GYENVIVVDGCPQVGPERLEKL-QSVINKIFSKFGKIVN 326
+ DEE+ LE K + GY+ V+V++G P V + + + + +K+ +K GK+
Sbjct: 15 VKDEEIDVSELEVKLNVTKPVGYDTVVVIEGAPVVEEAKQQDFFRFLSSKVLAKIGKVKE 74
Query: 327 E--YYPTTESGA---TTGFIFLEYTNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFNKYS 491
Y P E + G +F ++ N A V+ + ++ K HTF+V K
Sbjct: 75 NGFYMPFEEKNGKKMSLGLVFADFENVDGADLCVQELDGKQILKNHTFVVRKLNQLEKAF 134
Query: 492 DIPKEWEPPSPQPFKVQSDLQWYLMD 569
P E+ + FK + L+ +L D
Sbjct: 135 STPDEFS-FEEREFKEREHLRSWLTD 159
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 34.7 bits (76), Expect = 0.010
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYPT-TESGATTGFIFLEYTNPQNAAEAVKATNNCKLDKQHTFL 458
I +IF +G I + + P +S G+ ++EY AA AV NN +LD + F+
Sbjct: 115 IAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFV 172
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 34.7 bits (76), Expect = 0.010
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 300 FSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLD 440
FSKFGK+ PT G GF F+ + + A EA+ + N ++D
Sbjct: 128 FSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEID 174
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.5 bits (68), Expect = 0.092
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 297 IFSKFGKIVN-EYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLD 440
IFS+FGKI++ + E+G + + F+E+ N ++ +A N +D
Sbjct: 263 IFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLID 311
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 31.5 bits (68), Expect = 0.092
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 297 IFSKFGKIVN-EYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKL 437
+FS+FG+ V+ E+G + GF FL+Y + ++ AV N KL
Sbjct: 50 VFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKL 97
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 31.1 bits (67), Expect = 0.12
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 279 QSVINKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATN 425
+S++ F FG+I++ E + F+E+ P++A EA++ N
Sbjct: 19 ESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 31.1 bits (67), Expect = 0.12
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 279 QSVINKIFSKFGKIVN-EYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLDKQHTF 455
++ I ++++ GK V + +G G+ F+E+ +P A+ A+ N H F
Sbjct: 106 EAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLF 165
Query: 456 LVN 464
+N
Sbjct: 166 KLN 168
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 30.7 bits (66), Expect = 0.16
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 396 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSD 494
N + K N K DK FL NLFT+F+K+ D
Sbjct: 30 NIVKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 30.3 bits (65), Expect = 0.21
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 396 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSD 494
N + K N K DK FL NLFT+F+K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 30.3 bits (65), Expect = 0.21
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 396 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSD 494
N + K N K DK FL NLFT+F+K+ D
Sbjct: 50 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 82
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 30.3 bits (65), Expect = 0.21
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 396 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSD 494
N + K N K DK FL NLFT+F+K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLDNLFTEFSKFHD 62
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 28.7 bits (61), Expect = 0.65
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 264 RLEKLQSVINKIFSKFGKIVNEYYPTTESGATTGF 368
+ K++ +N +F++F K N YYP + F
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYPDGRISTRSNF 105
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 396 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKY 488
N + K N K +K FL +LFT+F+K+
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKF 89
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 28.7 bits (61), Expect = 0.65
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 264 RLEKLQSVINKIFSKFGKIVNEYYPTTESGATTGF 368
+ K++ +N +F++F K N YYP + F
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYPDGRISTRSNF 105
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 396 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKY 488
N + K N K +K FL +LFT+F+K+
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKF 89
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.7 bits (61), Expect = 0.65
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 264 RLEKLQSVINKIFSKFGKIVNEYYPTTESGATTGF 368
+ K++ +N +F++F K N YYP + F
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYPDGRISTRSNF 105
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 396 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKY 488
N + K N K +K FL +LFT+F+K+
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKF 89
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.7 bits (61), Expect = 0.65
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 264 RLEKLQSVINKIFSKFGKIVNEYYPTTESGATTGF 368
+ K++ +N +F++F K N YYP + F
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYPDGRISTRSNF 105
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 396 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKY 488
N + K N K +K FL +LFT+F+K+
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKF 89
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 28.3 bits (60), Expect = 0.86
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 264 RLEKLQSVINKIFSKFGKIVNEYYP 338
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 396 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKY 488
N + K N K +K FL +LFT+F+K+
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKF 89
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 28.3 bits (60), Expect = 0.86
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 174 LADLLEQKPKESDGYENVIVVDGCPQVGPE-RLEKLQSVINKIFSKFGKIVNEYYPTTES 350
L ++ K D VI++D P +L+K ++ +NK +F ++ Y TE
Sbjct: 771 LEKAIDLAEKVKDFQTMVILLDCLDPKDPTIKLQKQKACLNKYKEEFADVIFFYLVDTEQ 830
Query: 351 GATTGFIFLEY 383
A+ FLEY
Sbjct: 831 YASLLHDFLEY 841
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/81 (19%), Positives = 36/81 (44%)
Frame = +3
Query: 270 EKLQSVINKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLDKQH 449
E + + +F +FG+I + ++ GF F+ Y N + A +AV N+ + +
Sbjct: 271 EITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKK 330
Query: 450 TFLVNLFTDFNKYSDIPKEWE 512
++ + ++ K +E
Sbjct: 331 LYVGRAQKKHEREEELRKRYE 351
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 459 LKMYAAYLIYNYLSPSPLQQRSGDWYI 379
LK AY I +Y SP+PL++ S +++
Sbjct: 250 LKDAVAYPIVSYCSPNPLRETSNPYFL 276
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 165 EELLADLLEQKPKESDGYENVIVVDGCPQVGPERLEKLQSVINKI 299
E L L +QKP E+D ++VD +V P+R + +++ KI
Sbjct: 295 EALCKTLEKQKPTEADIKRWTLLVDKMIKVDPQRRGRYRTLQEKI 339
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 2.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 264 RLEKLQSVINKIFSKFGKIVNEYYPTTESGATTGF 368
+ K++ +N F++F K N YYP + F
Sbjct: 71 KTNKIKEFLNDPFTEFSKFHNSYYPDGRISTRSNF 105
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCK 434
+ + + G ++N +G + G +EY+ + A A+K +N K
Sbjct: 82 LKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQK 130
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 300 FSKFGKIVNEYYPTTE-SGATTGFIFLEYTNPQ 395
F + G++ + PT + SG G+ F+E+ NP+
Sbjct: 112 FKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPK 144
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 486 YSDIPKEWEPPSPQPFKVQSD 548
+SD+ + PP+P P +V+SD
Sbjct: 221 FSDVERYSHPPTPPPEQVRSD 241
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.0 bits (52), Expect = 8.0
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +3
Query: 444 QHTFLVNLFTDFNKYSDIPKEWEPPSPQPFKV 539
Q+T LVN DFNK KE E P KV
Sbjct: 626 QNTKLVNRNLDFNKVEKFGKEIEELEPVVQKV 657
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 378 EYTNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSDIPKEWE--PPSPQ 527
E+ NA + K+ + K +K+H + LF++ ++ D W PP P+
Sbjct: 416 EFLKKSNA-DTYKSEADKKKEKEHEEIKALFSEVSRTLDSLASWHYVPPPPE 466
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 279 QSVINKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQN 398
Q +++I++K K ++ +YP E + + L +TN N
Sbjct: 84 QRELSEIYNKCLKALHPFYPVFEVNSNLYYQLLMFTNYSN 123
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 216 YENVIVVDGCPQVGPERLEKLQSVINK 296
YE +IV G ++ PE+LE+ + + K
Sbjct: 27 YERLIVQFGTRKITPEQLERFEKLTGK 53
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 424 FVAFTASAAFWGLVYSKNMNPVVAP 350
FV F A G+VY+K+++ V+ P
Sbjct: 891 FVVFIARFGLEGIVYTKSLSSVLEP 915
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,770
Number of Sequences: 5004
Number of extensions: 50839
Number of successful extensions: 238
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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