Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_N08
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 112 2e-25
08_02_0162 + 13464698-13464974,13465719-13465837,13465920-134665... 37 0.010
05_03_0022 + 7452234-7452389,7452955-7453113 35 0.041
04_04_0435 - 25170348-25170593,25170989-25171189,25171580-251717... 35 0.041
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 32 0.29
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 31 0.50
07_03_1316 + 25736931-25737206,25737276-25737329,25738036-257381... 31 0.50
10_08_0254 + 16236689-16236793,16237760-16237808,16237988-162380... 31 0.66
05_03_0403 - 13534954-13535462,13537895-13538050,13538545-13538644 31 0.66
09_03_0087 - 12237226-12237346,12237423-12237555,12237641-122377... 30 1.2
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549... 29 2.0
04_04_0082 - 22603038-22603472,22603561-22604499 29 2.0
11_05_0068 - 18782658-18782984,18784634-18784783,18784853-187857... 29 2.7
03_05_0066 - 20455976-20456161,20456251-20456347,20456608-204567... 29 2.7
12_01_0406 - 3212007-3212757,3212856-3212988,3215840-3215927,321... 29 3.5
07_01_0688 - 5211484-5211626,5211730-5211826,5211930-5212105,521... 29 3.5
07_01_0513 + 3828196-3828309,3828408-3828722,3828823-3828879,382... 29 3.5
04_03_0768 - 19396146-19396607,19397855-19398175,19398424-193995... 29 3.5
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 29 3.5
11_01_0002 + 3386-3541,3619-3717,4114-4182,4275-4459,4662-4677 28 4.7
05_01_0290 + 2270749-2271037,2272227-2272363,2272660-2272805,227... 28 4.7
12_01_0001 + 1777-1935,2002-2109,2492-2560,2652-2836,3040-3055 28 6.2
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 27 8.2
02_05_0627 + 30463452-30463774,30463841-30463956,30464125-304643... 27 8.2
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 112 bits (269), Expect = 2e-25
Identities = 60/142 (42%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Frame = +3
Query: 162 DEELLADLLEQKPKESDGYENVIVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNE--YY 335
DE+LL ++ + G+ NV+VVD P V PE+ EKL++VI KI+S+ G I +
Sbjct: 43 DEDLLR--IDDPMELEMGFANVVVVDNLPVVPPEKFEKLENVIRKIYSQIGAIKEGGLWM 100
Query: 336 PTT-ESGATTGFIFLEYTNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSDIPKEWE 512
P E+ T G+ F+EY PQ A A + TN KLDK H F VN+F DF+KY +P EW
Sbjct: 101 PVNPETKKTYGYCFIEYNTPQEAELAREKTNGYKLDKSHIFAVNMFDDFDKYMKVPDEWM 160
Query: 513 PPSPQPFKVQSDLQWYLMDPDA 578
P +P+ +LQ +L D A
Sbjct: 161 PAEIKPYTPGENLQKWLADEKA 182
>08_02_0162 +
13464698-13464974,13465719-13465837,13465920-13466579,
13466686-13466763,13466849-13466938,13467241-13467378,
13467730-13467738
Length = 456
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLDKQHTFLVNL 467
+ +IF KFG I + G + F F+ + NP +AA AV+ N K D + ++
Sbjct: 234 LKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRA 293
Query: 468 FTDFNKYSDIPKEWE 512
+ ++ +++E
Sbjct: 294 QKKSEREMELKEKFE 308
>05_03_0022 + 7452234-7452389,7452955-7453113
Length = 104
Score = 35.1 bits (77), Expect = 0.041
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +3
Query: 204 ESDGYENVIVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTESGATTGFIFLEY 383
+S G E+ + V P ER K FS +G + +E E+G + GF F+ +
Sbjct: 17 DSKGQESRVYVGNLPYRADERSLK------DSFSNYGAVSSEIAVDRETGRSRGFGFVSF 70
Query: 384 TNPQNAAEAVKATN 425
+ ++A++A+K N
Sbjct: 71 QDSKSASDAIKGMN 84
>04_04_0435 -
25170348-25170593,25170989-25171189,25171580-25171756,
25172284-25172418,25173131-25173262,25173292-25173369,
25173452-25174108,25174210-25174328,25175897-25176173
Length = 673
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLDKQHTFL 458
++ FS FG I++ T E G + GF F++Y + A A+K+ N ++ + ++
Sbjct: 143 LHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 199
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 32.3 bits (70), Expect = 0.29
Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Frame = +3
Query: 159 PDEELLADLLEQKPKESDGYENVIVVDGCPQVGPERLEKLQSVI-----NK------IFS 305
PDE + + LE + + + N +++ + ++ +V+ NK IFS
Sbjct: 231 PDETVAPEELEDTIRSKEAHTNAVILQSLGDIPDAEIKPQDNVLFVRELNKDEDLYTIFS 290
Query: 306 KFGKIVN-EYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFN 482
FG + + E ++G + F F+E+ + A +NC +D + + DF+
Sbjct: 291 HFGSVTSAEIIRDYKTGDSLCFAFIEFEKKEACERAFFMMDNCLIDDR-----RIRVDFS 345
Query: 483 KYSDIPKEW 509
+ + K+W
Sbjct: 346 Q--SVSKQW 352
>10_08_0747 - 20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 31.5 bits (68), Expect = 0.50
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Frame = +3
Query: 159 PDEELLADLLEQKPKESDGYENVIVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNE--- 329
P L L++QK + D E+ + V G +S I K+FS FGKI+ E
Sbjct: 848 PRTSYLLGLMDQKGFDGDRSESRLYV------GNLDFRVSESDIIKMFSPFGKIIAEDFL 901
Query: 330 -YYPTTESGATTGFIFLEYTNPQNAAEAVKATN 425
+ + G G+ F++YT + A A + N
Sbjct: 902 WHTRGPKRGEPRGYAFVQYTTKEEAQLAKEKMN 934
>07_03_1316 +
25736931-25737206,25737276-25737329,25738036-25738189,
25740235-25740313,25740413-25740492,25740588-25740654,
25741548-25741619,25742071-25742223,25742309-25742392,
25742811-25742877
Length = 361
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYP-TTESGATTGFIFLEYTNPQNAAEAV 413
++ +F K+G++V+ Y P +G + GF F+ Y A +AV
Sbjct: 168 LSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAV 210
>10_08_0254 +
16236689-16236793,16237760-16237808,16237988-16238076,
16238178-16238234,16238684-16238746,16238828-16238893,
16239520-16239606,16239691-16239784,16240351-16240673,
16241022-16241048,16241065-16241145,16241445-16241476,
16242126-16242266,16242455-16242516,16243170-16243387
Length = 497
Score = 31.1 bits (67), Expect = 0.66
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +3
Query: 177 ADLLEQKPKESDGYENVIVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTE-SG 353
A+LL Q E + V + PQV E L +L F + G +VN Y P +
Sbjct: 11 ANLLGQHSAERNQDATTYVGNLDPQVSEELLWEL-------FVQAGPVVNVYVPKDRVTN 63
Query: 354 ATTGFIFLEYTNPQNAAEAVKATNNCKL 437
G+ F+E+ + ++A A+K N KL
Sbjct: 64 LHQGYGFVEFRSEEDADYAIKILNMIKL 91
>05_03_0403 - 13534954-13535462,13537895-13538050,13538545-13538644
Length = 254
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 294 KIFSKFGKIVNEYYPTTESGAT-TGFIFLEYTNPQNAAEAVKATN 425
++F +FG + Y PT SG T GF + + ++A EAV+A N
Sbjct: 191 ELFGRFGPLWMWYVPTRGSGGTCKGFGCVVFQRHRHAEEAVEALN 235
>09_03_0087 -
12237226-12237346,12237423-12237555,12237641-12237730,
12238992-12239198,12239738-12239813,12240019-12240148,
12241024-12241121
Length = 284
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 243 CPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTE 347
CP +GP ++K+ V+ + SK+G + + T +
Sbjct: 152 CPDIGPAEVQKMADVVKLLESKYGTKITPLFITID 186
>06_03_0614 -
22753092-22753349,22754059-22754277,22754712-22754960,
22755186-22755275,22755379-22755456,22755562-22756337,
22757042-22757384
Length = 670
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/92 (20%), Positives = 37/92 (40%)
Frame = +3
Query: 300 FSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLDKQHTFLVNLFTDF 479
FS FG I + +G + F F+ + + A AVK N + ++
Sbjct: 260 FSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKS 319
Query: 480 NKYSDIPKEWEPPSPQPFKVQSDLQWYLMDPD 575
+ +++ ++E Q F+ + YL + D
Sbjct: 320 ERQAELKAKFEHDKNQKFEKLQTVNLYLKNLD 351
>04_04_0082 - 22603038-22603472,22603561-22604499
Length = 457
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 484 LLKSVNRFTKNVCCLSNLQLFVAFTASAAFWGLV 383
LLK +K+V C+ N Q AFT+S +G+V
Sbjct: 12 LLKGTAHASKDVYCIYNSQALTAFTSSLYAFGMV 45
>11_05_0068 -
18782658-18782984,18784634-18784783,18784853-18785716,
18785877-18786005,18786112-18786188,18786507-18786607,
18786772-18786896
Length = 590
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 481 LKSVNRFTKNVCCLSNLQLFVAFTASAAFWGLVYSKNMNP 362
LKS N + CC + + + TA F+GL+ +K MNP
Sbjct: 85 LKSTNFVSIACCCCNTVFINFQLTADQCFFGLM-AKRMNP 123
>03_05_0066 -
20455976-20456161,20456251-20456347,20456608-20456738,
20456814-20456869,20457498-20457543
Length = 171
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 285 VINKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLDKQ 446
V+ + FS +G++V P G GF+ +Y+N +A EA++ N +L Q
Sbjct: 48 VLKQAFSPYGELVYVKIPV---GKRCGFV--QYSNRASAEEAIRMLNGSQLGGQ 96
>12_01_0406 -
3212007-3212757,3212856-3212988,3215840-3215927,
3216124-3216489
Length = 445
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -3
Query: 270 RGARARPVGSHRQRSHSRNHQIPLAFAPTGLPIILHRECRRQIPQD 133
RG R VG R RSHS H++ A ++ C +P +
Sbjct: 20 RGFEVRLVGHRRGRSHSAVHELRDGHAAAAAADVVQSSCWANLPPE 65
>07_01_0688 -
5211484-5211626,5211730-5211826,5211930-5212105,
5212240-5212631,5212712-5212960,5213046-5213188,
5213283-5213402,5214491-5214835
Length = 554
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 186 LEQKPKESDGYENVIVVDGCPQVGPERLEKLQSVIN 293
L K KE+D N ++VDG +G +LE++++ I+
Sbjct: 208 LVPKDKEADVINNRLIVDGANGIGGLKLEEIKAKIS 243
>07_01_0513 +
3828196-3828309,3828408-3828722,3828823-3828879,
3829668-3829826,3829918-3830028,3830173-3830259,
3830359-3830591,3830808-3830886,3831173-3831316,
3831529-3831568,3831667-3831729,3832193-3832224,
3832320-3832361,3832444-3832557
Length = 529
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 514 GSHSFGISEYLLKSVNRFTKNVCCLSNLQLFVAFTASAAFWGLVYSKNMNP 362
G+H + ++YL ++R TK V C + + F S A+W + +K NP
Sbjct: 222 GTHVYPKNKYLTLQMSRSTKGVVCEDVFESLIVF--SEAWW--IGTKEENP 268
>04_03_0768 -
19396146-19396607,19397855-19398175,19398424-19399569,
19400073-19400855,19402114-19402149
Length = 915
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/86 (25%), Positives = 40/86 (46%)
Frame = +3
Query: 162 DEELLADLLEQKPKESDGYENVIVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPT 341
+ + D+ Q + S + V+G P + R E L S F KFG++++ Y P+
Sbjct: 451 NSRIFGDVGRQSNRASHKASRTLYVNGIP-LESNRWEALLSH----FQKFGQVIDIYIPS 505
Query: 342 TESGATTGFIFLEYTNPQNAAEAVKA 419
A F++++ + A A+KA
Sbjct: 506 NSEKA-----FVQFSKREEAEAALKA 526
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = -3
Query: 273 SRGARARPVGSHRQRSHSRNHQIPLAFAPTGLPIILHRECRRQIPQDHQNQALRHNFAPH 94
SRG R RP G QR +P F P GLP + IP + L F P
Sbjct: 284 SRGGRGRPNGRDSQRVGVTLPIMPPPFGPLGLPPGPMQHIGPNIPHSPGHPLLPGVFVPP 343
Query: 93 Y 91
+
Sbjct: 344 F 344
>11_01_0002 + 3386-3541,3619-3717,4114-4182,4275-4459,4662-4677
Length = 174
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLD 440
I ++FS+ G + +SG + G + ++ +A AVK NN +LD
Sbjct: 84 IKELFSEVGDVKRYSINYDKSGRSKGTAEVVFSRKSDALAAVKRYNNVQLD 134
>05_01_0290 +
2270749-2271037,2272227-2272363,2272660-2272805,
2272853-2272877
Length = 198
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 270 EKLQSVINKIFSKFGKIVNEYYPTTE-SGATTGFIFLEYTNPQNAAEAVKATNNCKL 437
E + ++ IF FG++ N + +G G+ +EY + A A+KA + +L
Sbjct: 111 EAQEDDLHNIFRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKALDGTEL 167
>12_01_0001 + 1777-1935,2002-2109,2492-2560,2652-2836,3040-3055
Length = 178
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLD 440
I ++FS+ G + SG + G + ++ +A AVK NN +LD
Sbjct: 88 IKELFSEVGDVKRYSINYDRSGRSKGTAEVVFSRKSDALAAVKRYNNVQLD 138
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/78 (23%), Positives = 39/78 (50%)
Frame = +3
Query: 195 KPKESDGYENVIVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTESGATTGFIF 374
K ++SDG+E+ ++ ++ ++ + + K G +V ++ ++G G +
Sbjct: 52 KHEKSDGHEDYGLL---VSEKAKKYAIIKELDEPVTLKDGTVVLQFEVRLQNGLECGGAY 108
Query: 375 LEYTNPQNAAEAVKATNN 428
L+Y PQ+AA K +N
Sbjct: 109 LKYIRPQDAAWDAKEFDN 126
>02_05_0627 +
30463452-30463774,30463841-30463956,30464125-30464371,
30464458-30464555,30465216-30465284,30465752-30465820,
30465913-30466028
Length = 345
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 279 QSVINKIFSKFGKIVN-EYYPTTESGATTGFIFLEYTNPQNAAEAVKATN 425
+ + F FG++V + S + G+ F+EYT + A+KA N
Sbjct: 292 EKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAMN 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,495,467
Number of Sequences: 37544
Number of extensions: 313384
Number of successful extensions: 1012
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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