Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N07
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    29   0.47 
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    27   1.4  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   3.3  
SPCC297.04c |set7||histone lysine methyltransferase Set7 |Schizo...    26   3.3  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   7.7  

>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 434 GRLYFSLLVYTHIYVSGF--FFPPYLIYSICDN*QTSNVRYTKY 559
           G+LY  L  + H+YV  F  F  PY+ Y   +   +  VRY  Y
Sbjct: 15  GQLYIKLPTFFHLYVWPFALFVYPYIGYVYQNKLYSEEVRYLTY 58


>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 347 DKVIVFHNINILI*YVNFLSAILFINPIYGRLYFSLLVYTHIYVSGFFFPPYLIYSIC 520
           D  +VFH  N L+ +V  L+     + I+G +  S L  T I V+      YL++ +C
Sbjct: 37  DTAVVFHETNTLVRWVQTLAIAEVFHSIFGLVSSSPLT-TIIQVASRL---YLVWGVC 90


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 448 KIKTSVDRIYKQNSTQKINILYQNIN 371
           K+   V+RIY Q    K+N+ +Q +N
Sbjct: 574 KLLLKVERIYSQARNWKLNLTHQQLN 599


>SPCC297.04c |set7||histone lysine methyltransferase Set7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 502 IRWKKKTRHIYMCVYKKRKIKTS 434
           + WKK  R+ Y+  Y  R+IKT+
Sbjct: 86  VYWKKDNRNNYISYYTLREIKTN 108


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 445 IKTSVDRIYKQNSTQKINILYQNINIMKNYHL 350
           +K ++  IYK NST++ +  ++ I+  +  HL
Sbjct: 93  LKHNIPCIYKSNSTKRSHSRHEEIHHQQQLHL 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,163
Number of Sequences: 5004
Number of extensions: 38841
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)