Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N07
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF040657-4|AAB95053.1|  261|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical p...    27   7.0  
Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U41270-1|AAA82439.2|  411|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical
           protein B0495.7 protein.
          Length = 895

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
 Frame = -1

Query: 475 IYMCVYKKRKIKTSVDRIYKQNSTQKINILYQNINIMKNYHLVNFEL*I----SILKIIT 308
           + MC YK  +I  ++  +    +   ++  Y + N ++N  +V ++  +    SIL ++T
Sbjct: 446 LVMCWYKMPEIVGALYVLPMLIAGAIVHSHYADNNRIRNVEMVQYDTILLSFASILFLMT 505

Query: 307 FYNVNSLYIHLN 272
           FYN++S +  LN
Sbjct: 506 FYNLSSAFYVLN 517


>Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical
           protein T05D4.3 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 376 YFDIIC*FFECYFVYKSYLRTSLFFSSCIHTYICVWFFFSTLFNLFY 516
           +F II  FF  + ++ S+LR S          + +  +F+ +++ FY
Sbjct: 203 FFQIISSFFGFWPMFPSFLRRSAQLLHIFFNSVVITLWFNAIYDFFY 249


>U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical
           protein T10E10.3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 156 RSQCNFTISNRNVKGMFFYFILI 88
           R++C+    N N+   +FYF+LI
Sbjct: 362 RTRCHMRFENNNIADKYFYFMLI 384


>AF040657-4|AAB95053.1|  261|Caenorhabditis elegans Hypothetical
           protein T20H9.4 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
 Frame = -1

Query: 421 YKQNSTQKINILYQNINIMKNYHL-VNFEL*ISILKIITFYNVNSLYIHLNAAFIVRVVS 245
           YK+ S + + +++++ +I++ Y+L  N +L + ILK  +F +V S  I LN   I + ++
Sbjct: 73  YKERSIKDLAVIFKHASILELYNLGDNVKLLVDILK-DSFIHVES--IKLNCITIDKCLA 129

Query: 244 -TSKFRTKSL 218
             S+ +TK L
Sbjct: 130 ILSRCKTKVL 139


>Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical
           protein C16C10.12 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 129 YLS*SYIVNALRVVVRLWHIKINFLQTHLNNDFVLNLLVETTRTMKAAF-KCMYKLFTL 302
           YL    I  AL +V+  W I +N     +    ++++LVE + T    F  C+++  +L
Sbjct: 445 YLPLFTIDGALMIVISYWMIGLNSTWQQVAKSILISVLVEQSATSCGLFLACLFETTSL 503


>Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical
           protein C50B6.10 protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +3

Query: 189 KINFLQTHLNNDFVLNLLVETTRTMKAAFKCMYKLFTL*NVIILRIE 329
           +I F  T + N F+++L++  T+ +  A+K +   F+L  ++    E
Sbjct: 15  EIGFFSTLIVNSFLVHLIIFYTKQVFGAYKYLVLSFSLMGIVFATAE 61


>U41270-1|AAA82439.2|  411|Caenorhabditis elegans Hypothetical
           protein AH9.1 protein.
          Length = 411

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 400 FECYFVYKSYLRTSLFFSSCIHTYICVWFFFST 498
           F+C + YK +++  + F + ++    V FFF T
Sbjct: 10  FDCRYKYKLFVKALVLFLTIVYNAGLVHFFFRT 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,268,512
Number of Sequences: 27780
Number of extensions: 217228
Number of successful extensions: 543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)