Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N07
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   3.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   3.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   8.6  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 520 TYRIN*IRWKKKTRHIYMCVYKKRKIKTSVDRIY 419
           T ++   +W  +  HI    YKK  +K ++ R Y
Sbjct: 88  TSKLKIYKWNNQILHILWTSYKKVFMKDNILRQY 121


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 520 TYRIN*IRWKKKTRHIYMCVYKKRKIKTSVDRIY 419
           T ++   +W  +  HI    YKK  +K ++ R Y
Sbjct: 71  TSKLKIYKWNNQILHILWTSYKKVFMKDNILRQY 104


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/47 (19%), Positives = 22/47 (46%)
 Frame = +3

Query: 42  KCQHIYVIFHIGIIT*LK*NKKTFL*HFGYLS*SYIVNALRVVVRLW 182
           KC +     +IG++T +  +  T++ + G     Y +   +  + +W
Sbjct: 634 KCPYPSYYSYIGVLTLVATSMPTYICYLGKAYLMYAIAGSQCFINIW 680


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 131 VTEMSKECFFILF*LSNNAYMKYYINV 51
           ++ +S  C +     +NN Y K Y N+
Sbjct: 304 ISSLSNSCNYSNNYYNNNNYKKLYYNI 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,403
Number of Sequences: 438
Number of extensions: 2758
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)