Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N06
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   2.0  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    26   2.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.0  

>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 138 LLKVCRGMDSLSDSCSMLVFKYYENIVDAVKKDL 239
           ++K+C+ MD LS S   +++  YE++   V+  L
Sbjct: 452 IVKLCKAMDELSTSEKRILWLCYEHVAMHVETTL 485


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 7   GNNSNLSYRTHRRNVSSAVTTVKELSELSGK 99
           G  SN+  R +R +V SA+T+ +E  +L  K
Sbjct: 54  GTASNIKSRVNRLSVLSAITSTRERLKLYNK 84


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 75  GTVGALRKKFDQTPYEDFL 131
           G +  L +KFD TP EDF+
Sbjct: 890 GLLDFLDEKFDNTPREDFV 908


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,009
Number of Sequences: 5004
Number of extensions: 29913
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)