Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_N06
(408 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0018 + 3016137-3016186,3016529-3016776,3018717-3018811,302... 31 0.35
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 31 0.47
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138... 30 0.81
01_06_0869 - 32591669-32591794,32591923-32592075,32592293-325923... 29 1.4
11_06_0370 + 22768977-22769523,22769619-22770642,22770784-227711... 29 1.9
08_02_0189 + 13984892-13984943,13985929-13986480,13986577-139867... 29 1.9
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 27 4.3
05_06_0030 - 25060711-25060830,25060981-25061130,25061473-250615... 27 7.6
03_06_0335 + 33211705-33211800,33211886-33211982,33212078-332122... 27 7.6
>09_02_0018 +
3016137-3016186,3016529-3016776,3018717-3018811,
3020025-3020330,3021288-3021336,3021436-3021637,
3023364-3023532,3023605-3023634,3023742-3023807,
3025313-3025378,3029404-3029464,3029592-3029719,
3030716-3030757,3031074-3031190,3031280-3031339
Length = 562
Score = 31.1 bits (67), Expect = 0.35
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -3
Query: 151 HTFNKPTKKSS*GVWSNFFLRAPTVP*QLLQPTTRSFCEFYR 26
H +PT+ S WSN++LR QLL TR+ E+Y+
Sbjct: 6 HISQEPTRGSRWNRWSNWYLRIVNNRLQLLCQGTRTVDEYYK 47
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 30.7 bits (66), Expect = 0.47
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 168 LSDSCSMLVFKYYENIVDAVKKDLTPQSICHVSGQCT 278
+S C +V +Y + I+D ++ + P +C G CT
Sbjct: 326 VSQECKAVVSQYGQQILDQLRAETKPAKVCSSVGLCT 362
>05_07_0145 +
28012268-28012624,28012734-28012794,28013758-28013852,
28013944-28014056,28014436-28014604,28014677-28014716,
28014797-28014861,28015485-28015598,28015687-28015751,
28015927-28016083,28016167-28016286,28016447-28016535,
28016631-28016715
Length = 509
Score = 29.9 bits (64), Expect = 0.81
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 168 LSDSCSMLVFKYYENIVDAVKKDLTPQSICHVSGQCT 278
+S C +V +Y + I+D + + P IC G CT
Sbjct: 316 VSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLCT 352
>01_06_0869 -
32591669-32591794,32591923-32592075,32592293-32592367,
32592467-32592597,32593788-32593896,32594745-32594936
Length = 261
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 66 NCQGTVGALRKKFDQTPYEDFLVGLLKVCR 155
+C+G VG KFD P+ D LV K+CR
Sbjct: 104 SCEGKVG---HKFDMEPHSDNLVNYGKLCR 130
>11_06_0370 +
22768977-22769523,22769619-22770642,22770784-22771170,
22771216-22771507
Length = 749
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +3
Query: 123 DFLVGLLKVCRGMDSLSDSCSMLVFKYYENIVDAVKKDLTPQSICHVSGQCTHRFH 290
DF + + R D+ C L+++ +++++D VKK + + QC+ FH
Sbjct: 462 DFCEPIYSMIRAADT-DKPCLHLIYEMWDSMIDKVKKIIYRHEGKELDEQCSFFFH 516
>08_02_0189 +
13984892-13984943,13985929-13986480,13986577-13986759,
13986826-13987006,13987238-13987654,13987742-13988128,
13988176-13988467
Length = 687
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +3
Query: 123 DFLVGLLKVCRGMDSLSDSCSMLVFKYYENIVDAVKKDLTPQSICHVSGQCTHRFH 290
DF + + R D+ C L+++ +++++D VKK + + QC+ FH
Sbjct: 382 DFCEPIYSMIRAADT-DKPCLHLIYEMWDSMIDKVKKIIYRHEGKELDEQCSFFFH 436
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 31 RTHRRNVSSAVTTVKELSELSGK 99
R HRRN+ + + V+E+ ELS K
Sbjct: 306 RRHRRNLEAKLERVEEMKELSSK 328
>05_06_0030 -
25060711-25060830,25060981-25061130,25061473-25061544,
25061631-25061761,25062487-25062635,25062998-25063239
Length = 287
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 84 GALRKKFDQTPYEDFLVGLLKVCR 155
G + KFD P+ D LV K+CR
Sbjct: 137 GKVEHKFDMKPHSDNLVNYGKLCR 160
>03_06_0335 +
33211705-33211800,33211886-33211982,33212078-33212204,
33212953-33213138,33213702-33213789,33214028-33214084,
33214171-33214260,33214339-33214461,33215024-33215098,
33215169-33215228,33215464-33215580,33215854-33216093,
33216181-33216246,33216370-33216459,33216914-33217003,
33217309-33217398,33217702-33217770,33217841-33217921,
33218108-33218215,33218336-33218439,33218822-33218935,
33219018-33219231
Length = 793
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 78 TVGALRKKFDQTPYEDFLVGLLKVCRGM 161
TVG++ K + P +D L L+++CRG+
Sbjct: 112 TVGSVYIKSKEAPAKDVLKDLVEMCRGI 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,192,161
Number of Sequences: 37544
Number of extensions: 190772
Number of successful extensions: 495
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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