Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_N06
(408 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 30 0.74
Z74039-2|CAA98501.1| 448|Caenorhabditis elegans Hypothetical pr... 29 0.98
Z66566-4|CAA91486.2| 103|Caenorhabditis elegans Hypothetical pr... 28 3.0
U41109-1|ABC48251.1| 248|Caenorhabditis elegans Hypothetical pr... 27 5.2
AC024756-1|AAT39979.1| 104|Caenorhabditis elegans Saposin-like ... 27 5.2
AC024755-7|AAO91688.1| 833|Caenorhabditis elegans Hypothetical ... 27 5.2
AC024755-6|AAF59639.1| 877|Caenorhabditis elegans Hypothetical ... 27 5.2
Z81097-1|CAB03175.1| 491|Caenorhabditis elegans Hypothetical pr... 27 6.9
U96695-1|AAB57697.1| 491|Caenorhabditis elegans deoxyuridinetri... 27 6.9
U13071-3|AAA20673.1| 286|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z49127-6|CAA88947.1| 454|Caenorhabditis elegans Hypothetical pr... 26 9.1
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 29.9 bits (64), Expect = 0.74
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 210 NIVDAVKKDLTPQSICHVSGQCTHRFHSHGEF 305
N+V A K S CH++G C H GE+
Sbjct: 1057 NMVPAQPKTCVESSDCHINGHCVINEHGAGEY 1088
>Z74039-2|CAA98501.1| 448|Caenorhabditis elegans Hypothetical
protein K03B8.2 protein.
Length = 448
Score = 29.5 bits (63), Expect = 0.98
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 192 VFKYYENIVDAVKKDLTPQSICHVSGQCTHRFHSHGEFTFPNQVAEFANYRRC 350
VF YYEN ++K++L ++ H+S +F T N++ F N C
Sbjct: 95 VFYYYENEFTSLKRELMSYAMAHISSNTCVKFQESNSAT--NRI-RFTNTGGC 144
>Z66566-4|CAA91486.2| 103|Caenorhabditis elegans Hypothetical
protein T25C12.2 protein.
Length = 103
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/52 (21%), Positives = 22/52 (42%)
Frame = +3
Query: 120 EDFLVGLLKVCRGMDSLSDSCSMLVFKYYENIVDAVKKDLTPQSICHVSGQC 275
+ FL K +G+ L +C ++ I+ ++ P+ +C QC
Sbjct: 52 DKFLAECKKELKGIPFLEQTCLNYAHSEFDPIIKELESGTAPEDVCRAIEQC 103
>U41109-1|ABC48251.1| 248|Caenorhabditis elegans Hypothetical
protein F52E1.5 protein.
Length = 248
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 273 CTHRFHSHGEFTFPNQVAEFANYRRCT 353
C + FHSHG F + F + +CT
Sbjct: 184 CVNAFHSHGYKLFVKVLLTFCHQTKCT 210
>AC024756-1|AAT39979.1| 104|Caenorhabditis elegans Saposin-like
protein family protein23 protein.
Length = 104
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 213 IVDAVKKDLTPQSICHVSGQC 275
I+D +KKD+ P++IC +C
Sbjct: 84 IIDLIKKDVPPKTICQELKKC 104
>AC024755-7|AAO91688.1| 833|Caenorhabditis elegans Hypothetical
protein Y34B4A.4b protein.
Length = 833
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 202 YLNTNIEQESDSESIPRHTFN 140
YL ++ +S SESI RHTF+
Sbjct: 541 YLYMSLADDSQSESIARHTFS 561
>AC024755-6|AAF59639.1| 877|Caenorhabditis elegans Hypothetical
protein Y34B4A.4a protein.
Length = 877
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 202 YLNTNIEQESDSESIPRHTFN 140
YL ++ +S SESI RHTF+
Sbjct: 541 YLYMSLADDSQSESIARHTFS 561
>Z81097-1|CAB03175.1| 491|Caenorhabditis elegans Hypothetical
protein K07A1.2 protein.
Length = 491
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 186 MLVFKYYENIVDAVKKDLTPQSICHVSGQCTHRFHSHGEFT 308
+L+F + +N + K D Q IC G C + S E T
Sbjct: 272 VLLFNFTDNAFEVKKGDRIAQLICEKIGHCVYEAASELENT 312
>U96695-1|AAB57697.1| 491|Caenorhabditis elegans
deoxyuridinetriphosphatase protein.
Length = 491
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 186 MLVFKYYENIVDAVKKDLTPQSICHVSGQCTHRFHSHGEFT 308
+L+F + +N + K D Q IC G C + S E T
Sbjct: 272 VLLFNFTDNAFEVKKGDRIAQLICEKIGHCVYEAASELENT 312
>U13071-3|AAA20673.1| 286|Caenorhabditis elegans Hypothetical
protein T22F7.4 protein.
Length = 286
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 20 IYPIELTEGTCRRL*QLSRNCRSSQ 94
IYP+ L E C L SRNCR Q
Sbjct: 171 IYPLFLKEFCCETLECFSRNCRFFQ 195
>Z49127-6|CAA88947.1| 454|Caenorhabditis elegans Hypothetical
protein F13D12.6 protein.
Length = 454
Score = 26.2 bits (55), Expect = 9.1
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 141 LKVCRGMDSLSDSCSMLV-FKYYENIVDAVKKDLTPQSICHVSGQCTHRFHSHGEFTFPN 317
L + G S ++ LV F Y+ +VD K + S CH +HS EF+
Sbjct: 195 LAIGNGCVSANEGVDSLVNFLYHHGVVDQAKWEHMKTSCCHNDTDAC-PWHSFSEFSACG 253
Query: 318 QVAE 329
+ E
Sbjct: 254 EFVE 257
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,949,747
Number of Sequences: 27780
Number of extensions: 175848
Number of successful extensions: 550
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -