Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N05
         (194 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   1.0  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    24   2.4  

>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -3

Query: 168 NI*FKILREKETHLISHDCINLYIIY*VIYFLRQLPLRHFQYCSE 34
           N+   + +EK TH+I +D   +++++  + +  +L  +HF Y  +
Sbjct: 267 NLLNNVAKEKLTHIIKYDDYLVHLVHETLQYSVRLE-QHFHYTQD 310


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 103  VYNLLSYLFFAATTLAPFSILFGVL 29
            +Y+ ++++F A     PF+++FG L
Sbjct: 1290 IYSWVAFVFSAIIVEIPFNLVFGTL 1314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 663,516
Number of Sequences: 5004
Number of extensions: 9598
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)