Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N05
         (194 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0640 + 25744048-25745021,25745128-25745273,25747870-257479...    27   2.8  
04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345     26   3.7  
04_03_0815 - 19949584-19950111,19950210-19950632                       26   3.7  
07_03_0876 - 22215688-22215789,22216051-22216206,22217227-222172...    25   6.4  
02_04_0043 + 19185969-19186036,19186205-19187342                       25   6.4  
02_01_0050 - 352017-354272                                             25   6.4  
11_06_0010 + 19235419-19236450                                         25   8.5  

>11_06_0640 +
           25744048-25745021,25745128-25745273,25747870-25747945,
           25747996-25748230
          Length = 476

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2

Query: 100 YNLLSYLFFAATTLAPFSILFGVLVRA*RF 11
           Y +L+YLFF ATTL    +L G L+   RF
Sbjct: 238 YTILAYLFF-ATTLVTRHLLRGALLGDGRF 266


>04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345
          Length = 347

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 66  LPLRHFQYCSECWCALDGSPSC 1
           LP RH   C  C  A+D  P C
Sbjct: 313 LPCRHLCLCRGCEAAVDACPVC 334


>04_03_0815 - 19949584-19950111,19950210-19950632
          Length = 316

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 66  LPLRHFQYCSECWCALDGSPSC 1
           LP RH   C  C  A D  P C
Sbjct: 282 LPCRHLCLCGACEAAADACPVC 303


>07_03_0876 -
           22215688-22215789,22216051-22216206,22217227-22217247,
           22217311-22217580,22217793-22219178,22220562-22220621
          Length = 664

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 91  LSYLFFAATTLAPFSILFGV 32
           L+ LFF AT L+PF+  F V
Sbjct: 229 LAILFFPATALSPFADTFSV 248


>02_04_0043 + 19185969-19186036,19186205-19187342
          Length = 401

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 66  LPLRHFQYCSECWCALDGSPSC 1
           LP RH   C  C  A D  P C
Sbjct: 367 LPCRHLCLCRGCEAAADACPVC 388


>02_01_0050 - 352017-354272
          Length = 751

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -3

Query: 138 ETHLISHDCINLYIIY*VIYFLRQLPLR---HFQYCSEC 31
           + H+ISH    L I + +I+  +++P+R   + + C +C
Sbjct: 676 KVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDC 714


>11_06_0010 + 19235419-19236450
          Length = 343

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 66  LPLRHFQYCSECWCALDGSPSC 1
           LP RH   C  C   LD  P C
Sbjct: 309 LPCRHLCLCKACEPKLDACPVC 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,891,665
Number of Sequences: 37544
Number of extensions: 53208
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)