Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N05
         (194 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    25   5.6  

>Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical
           protein F16A11.1 protein.
          Length = 673

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 66  LPLRHFQYCSECWCALDGSPSC 1
           LP  H  +CS+C   +D  P C
Sbjct: 577 LPCNHDGFCSDCCNMMDHCPLC 598


>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -3

Query: 132 HLISHDCINLYIIY*VIYFLRQLPLRHFQYCSE 34
           + ++H C+  + +Y  I+FLR+  +++    S+
Sbjct: 188 YAVAHSCLPFFPVYITIFFLRKRIIKYLSSQSQ 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,689,722
Number of Sequences: 27780
Number of extensions: 56215
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)