Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N04
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    29   0.19 
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    28   0.59 
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    27   1.0  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    27   1.0  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   2.4  
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    26   2.4  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   4.1  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   4.1  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   4.1  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   4.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   9.5  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    24   9.5  

>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 283 EPRELTDDDIKDLAKLTDMTEFKRVLDEILIT 378
           + REL D D KD+  L +  +F  ++DE L++
Sbjct: 317 DERELIDPDQKDVFDLVNDNQFNDIMDEFLVS 348


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 286 PRELTDDDIKDLAKLTD 336
           P ELT  D K+LAK+TD
Sbjct: 312 PSELTSQDFKELAKMTD 328


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 292 ELTDDDIKDLAKLTDMTEF 348
           E+TDDD+KD+ +  D T+F
Sbjct: 80  EMTDDDMKDMKEPADGTDF 98


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 292 ELTDDDIKDLAKLTDMTEF 348
           E+TDDD+KD+ +  D T+F
Sbjct: 80  EMTDDDMKDMKEPADGTDF 98


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 236 LTKVSKHIKTTAKKVTFLSILLSV 165
           +T+VSK +K+ +KKVT L   L++
Sbjct: 915 ITEVSKQLKSNSKKVTVLRNKLNI 938


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 75  SEVTLFVTFLMACVSHICVRNNKYILI 155
           +  TLFV+FL +    I   NN+ IL+
Sbjct: 46  NSATLFVSFLTSASGEIATNNNRKILM 72


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 251 PSLSVLTKVSKHIKTTAKKVTFLSILLSVWCIY*NIFIIS 132
           P+L  +  V+K + + A  VTF +IL++   +  N+  IS
Sbjct: 369 PNLLKVCSVTKKLASQAANVTFAAILVNCGVLSRNLSFIS 408


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -2

Query: 103 KNVTNKVTSL*SSRKWNKIFKTNLYYYISVNNLV 2
           + + NK+TSL +SRK + ++   LY  + +++ V
Sbjct: 590 EQLINKLTSLQASRKKDTLYIRKLYEELGIDDTV 623


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 226 TLVNTDKEGLKFYQEKNFHEPRELTDDDIKDL 321
           TLV   +E +K ++EK     +E++D D+K++
Sbjct: 761 TLVPQHEEKIKSFEEKLSALKKEMSDVDLKEI 792


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 268 EKNFHEPRELTDDDIKDLAKLTDMTEFKRVLDE 366
           E +  EP+ +T++DIK  +     T F+ + DE
Sbjct: 885 EIDIDEPKPITNEDIKQASNFLRGTIFEGLADE 917


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 286  PRELTDDDIKDLAKLTDMTEFKRVLDEILITRVV 387
            P E  DDD+  +A+ + + E    LD I +T V+
Sbjct: 1437 PEEQIDDDVSPVAQDSSLEELLISLDIIDLTSVM 1470


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 217 CLLTLVNTDKEGLKFYQEKNFHEPRELTDDDIKDLAKLTDMTE 345
           CL  L++ DK+ +  Y  + ++  ++     I+D A+L  + E
Sbjct: 230 CLYELIDRDKKSIYNYLRRKYNPFKKKCKWTIEDEAELKKLVE 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,276
Number of Sequences: 5004
Number of extensions: 27964
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)