Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N04
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1195 - 25149891-25151402,25152194-25152493                       28   3.0  
04_03_0477 - 16393764-16394054,16394424-16394672,16394849-163949...    27   5.3  
08_01_0701 + 6200351-6200470,6200879-6201104,6201502-6201747,620...    26   9.2  

>08_02_1195 - 25149891-25151402,25152194-25152493
          Length = 603

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 274 NFHEPRELTDDDIKDLAKLTDMTEFKRV 357
           +F +P   TD  IK  +K TD+ EFK V
Sbjct: 176 SFLQPALSTDSFIKSASKRTDLAEFKAV 203


>04_03_0477 -
           16393764-16394054,16394424-16394672,16394849-16394989,
           16395654-16395795,16396287-16396665,16397178-16397436,
           16398232-16398288
          Length = 505

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 33  RFVLKILFHFRELQSEVTLFVTFLMACVSHICVRNNKYIL 152
           ++  K+L +F+E Q +VT    +++AC      + + Y L
Sbjct: 296 KYYSKLLINFKEFQDQVTDNEKYMVACTKEEFQKQSTYYL 335


>08_01_0701 +
           6200351-6200470,6200879-6201104,6201502-6201747,
           6201818-6201868,6202231-6202491,6202587-6202639,
           6202705-6202819,6202985-6203239,6203773-6204827
          Length = 793

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +1

Query: 190 VTFLAVVLMCLLTLVNTDKEGLKFYQEKNFHEPRELTDDDIKDLAKLTDMTEFKRVLDEI 369
           V F+ V  + + T+   ++  +K    KNFH  R +     KD+ K  D  E K +LD +
Sbjct: 580 VVFVCVKYLPVYTVPTEERFIVKRIGPKNFHMFRCVARYGYKDIHKRDDDFE-KMLLDRL 638

Query: 370 LI 375
           L+
Sbjct: 639 LL 640


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,128,838
Number of Sequences: 37544
Number of extensions: 136155
Number of successful extensions: 243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)