Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N04
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97016-2|ABC71840.1|  216|Caenorhabditis elegans Hypothetical pr...    32   0.17 
U97016-1|ABC71839.1|  234|Caenorhabditis elegans Hypothetical pr...    32   0.17 
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    31   0.38 
AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    28   2.0  
AF036703-3|AAB88556.2|  424|Caenorhabditis elegans Hypothetical ...    28   2.0  
U23514-6|AAC46544.2|  816|Caenorhabditis elegans Hypothetical pr...    27   3.6  
U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily a...    27   6.2  
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p...    26   8.2  
AF099920-7|AAK29842.2|  336|Caenorhabditis elegans Hypothetical ...    26   8.2  
AF099920-6|AAQ01531.1|  388|Caenorhabditis elegans Hypothetical ...    26   8.2  
AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    26   8.2  

>U97016-2|ABC71840.1|  216|Caenorhabditis elegans Hypothetical
           protein B0261.4b protein.
          Length = 216

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 256 KFYQEKNFHEPRELTDDDIKDLAKLTDMTEFKR 354
           K +QEK F + R+  DD+ +  A+  DM  FKR
Sbjct: 176 KLWQEKEFMKNRDRLDDEKRRAARTEDMDRFKR 208


>U97016-1|ABC71839.1|  234|Caenorhabditis elegans Hypothetical
           protein B0261.4a protein.
          Length = 234

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 256 KFYQEKNFHEPRELTDDDIKDLAKLTDMTEFKR 354
           K +QEK F + R+  DD+ +  A+  DM  FKR
Sbjct: 194 KLWQEKEFMKNRDRLDDEKRRAARTEDMDRFKR 226


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 30.7 bits (66), Expect = 0.38
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +1

Query: 289 RELTDDDIKDLAKLTDMTEFKR 354
           RELT+DD + LAK T +++FKR
Sbjct: 14  RELTEDDHEKLAKQTSISDFKR 35


>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
           family protein 4 protein.
          Length = 1802

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 39  VLKILFHFRELQSEVTLFVTFLM 107
           VL IL HF  L+S++TL   FLM
Sbjct: 381 VLTILMHFVALKSDMTLMFVFLM 403


>AF036703-3|AAB88556.2|  424|Caenorhabditis elegans Hypothetical
           protein T11F8.2 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 2   HEVIYRDIVIKICFKNFIPFPRTSK*SNFICNIFNGM 112
           H + +   +  +CF NF   P T+  + F+CN+   +
Sbjct: 270 HTISFLSFMALLCFYNFQRSPMTTYFAFFVCNVLTAL 306


>U23514-6|AAC46544.2|  816|Caenorhabditis elegans Hypothetical
           protein F48E8.4 protein.
          Length = 816

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 283 EPRELTDDDIKDLAKLTDMTEFKRVLDEILITRV 384
           EP + T+D I  +    DM+ F R++ E+ + ++
Sbjct: 607 EPSDTTEDFIFHMNLARDMSRFARLMTEVFVVKI 640


>U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical
           protein D2021.1 protein.
          Length = 1168

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 118 VTYVSEIINIF**IHHTDNKMERKVTFLAVVLMCLLTLVNTDKEG-LKFYQEKNFHEPRE 294
           V YV E+ +I+    H    +ER++ F  +   C + L+  D  G L+ YQE   H P  
Sbjct: 68  VRYVDEMKSIY--KTHKYKTIERRI-FYGLAKQCHVVLLANDWTGALELYQEVLSHHPDL 124

Query: 295 LTDD 306
            + D
Sbjct: 125 FSHD 128


>Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical
           protein ZK228.5 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 67  SRKWNKIFKTNLYYYISV 14
           SR W ++F   L+Y+ISV
Sbjct: 129 SRSWKRVFYITLHYFISV 146


>AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 305 protein.
          Length = 869

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -1

Query: 227 VSKHIKTTAKKVTFLSILLSVWCIY*NIFIISDTYVTDTCH*KCYK*SYFTLKFSEM 57
           +S+H++ T      L +  +VWC   NI  +S + +        YK S   L+  +M
Sbjct: 485 MSRHVRPTRPDTRLLQVTSNVWCTRFNISSLSPSLLPTFLGQVIYKTSVLHLQPRQM 541


>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
           protein F26D2.10 protein.
          Length = 1213

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 39  VLKILFHFRELQSEVTLFVTFLMACVSHICVRNNKYILINTP 164
           +L+ L    ++QS +TL    + +  SH+   NN  +L+ TP
Sbjct: 595 MLEYLDLLGKVQSNLTLVEKEIKSSTSHVNSTNNPVLLLKTP 636


>AF099920-7|AAK29842.2|  336|Caenorhabditis elegans Hypothetical
           protein H06H21.8a protein.
          Length = 336

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 93  QIKLLHFEVLGNGIKFLKQIFITISR 16
           +I + H +V+G+G+K  + +FI + R
Sbjct: 42  EIYVAHLKVVGDGVKVPESVFIKVPR 67


>AF099920-6|AAQ01531.1|  388|Caenorhabditis elegans Hypothetical
           protein H06H21.8b protein.
          Length = 388

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 93  QIKLLHFEVLGNGIKFLKQIFITISR 16
           +I + H +V+G+G+K  + +FI + R
Sbjct: 42  EIYVAHLKVVGDGVKVPESVFIKVPR 67


>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +1

Query: 175 KMERKVTFLAVVLMCLLTLVNTDKEGLKFYQEKNFHEPRELTDDDIKDLAKLTDMTEFK 351
           K+    T L +V++ LL ++  +K+GL   + +N +   + T+D IK +  L D+ + K
Sbjct: 415 KLSSTNTGLLIVVLFLLNVIAINKDGLIPSRIENNNNKTKSTEDAIK-MNHLWDLNDRK 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,846,351
Number of Sequences: 27780
Number of extensions: 150212
Number of successful extensions: 416
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)