Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N03
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    27   3.0  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   5.2  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   5.2  
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po...    25   6.8  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    25   6.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   9.0  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   9.0  

>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 173 VEVGRTYSLVSPNYPNNYSAGIQCRWLATCPNG-YNCRLVCPVIALPQSP 319
           VEVG+  S + P  P     G  CR    C +G YN   +CP +    +P
Sbjct: 74  VEVGKGVSSLKPGDPVAVEPGCVCRLCDYCRSGRYN---LCPHMEFAATP 120


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 383 TYCGRGSLN-VISIQQRLSVGLISSRSSQ*GNFG-CQLSAQLSSNTAACRCGERKQNR 550
           T CG   L+ +I I+      L   RS + G  G C ++    SNT AC C  +K N+
Sbjct: 48  TKCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIN-GSNTLACICNIKKDNK 104


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 365 QLNGAETYCGRGSLNVISIQQRLSVGLISSR 457
           QLN A  YCG GSL+ I  + R   G    R
Sbjct: 151 QLNIAMEYCGAGSLDAIYKRVRSQGGRTGER 181


>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 287 VCPVIALPQSPSCSSDRLLVSRTGDPQLNGAETYCGRGSLNVISIQQRL 433
           + P+  L QS     D +  SR G P L   E      ++ V S+Q RL
Sbjct: 156 IAPIYQLAQSVKSPVDIVYCSRPGQPPLLKEELEKECPNVRVKSVQNRL 204


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 41  EIPTCAVFINLFTYNIEMHLGWFFGILFLGYVRTQDPNCDFVQNVEV 181
           ++PT    +N+F  N  +   + F +L   YV T     D VQ+ E+
Sbjct: 179 QLPTLENLLNIFCSNSLVEKAYLFDVLSKIYVATDSSPVD-VQSYEI 224


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 422  VLI*HLMNPGRSKFQLRSVADPQSLIQAAGPTNTMDFEV 306
            V++ HL++   +  Q  ++ DP+ L+      N++ FEV
Sbjct: 893  VMLNHLVHEKFTNHQYSALKDPEKLVYETTSENSIFFEV 931


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +1

Query: 355 WGSATERS*NLLRPGFIKCYINTTEA*RRFNIFKIKSMRKLWMSAECTIILQYCSVQM 528
           W S  E    LL   F+K +     +  +    K  S+++L    +  I+L+ CS Q+
Sbjct: 205 WQSRIESWKQLLAKDFLKHHERNLCSIEKQTTLKNSSLKELCTEEDIVIMLEICSSQL 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,162
Number of Sequences: 5004
Number of extensions: 56399
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)