Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N03
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0909 - 25870852-25870933,25871175-25871336,25871437-258715...    33   0.14 
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237...    29   3.0  
03_01_0195 - 1548204-1548257,1548547-1548642,1548726-1548770,154...    28   5.3  
02_01_0094 - 667361-668962                                             27   9.3  
02_01_0093 + 655420-657021                                             27   9.3  

>06_03_0909 -
           25870852-25870933,25871175-25871336,25871437-25871558,
           25871762-25871982,25872537-25872675,25873290-25873513,
           25873830-25873941,25874411-25874611,25874686-25874853
          Length = 476

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = +2

Query: 98  LGWFFGILFLGYVRTQDPNCDFVQNVEVGRTYSLVSPNYPNNYSAGIQCRWLATCPNGYN 277
           +GW F +L L  +      C  V  V  GRT S V   YP+     ++  W A  PNGYN
Sbjct: 1   MGWRFALLLLHVLL-----C-LVNGVSCGRTSSYVRTEYPST-DIPLESEWFAV-PNGYN 52


>03_05_0440 +
           24322332-24322388,24323478-24323615,24323654-24323736,
           24325038-24325128,24326091-24326189,24326356-24326418,
           24327182-24327259,24329354-24329543,24329812-24330065,
           24330159-24330531,24331193-24331276,24332085-24332371,
           24332495-24332542,24333194-24333220,24333951-24333987,
           24334063-24334250,24334343-24334521,24334595-24334877,
           24335481-24335717,24335798-24335988,24336552-24336561,
           24336844-24336984,24337073-24337288,24338437-24338727,
           24338852-24339025
          Length = 1272

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/80 (21%), Positives = 35/80 (43%)
 Frame = +2

Query: 311 QSPSCSSDRLLVSRTGDPQLNGAETYCGRGSLNVISIQQRLSVGLISSRSSQ*GNFGCQL 490
           Q+P  S DR+ +S         A++  G   L+   +      G + SR ++ G++    
Sbjct: 331 QTPGRSGDRMFLSPVKSTDRKNADSEMGSSKLHGFQVDADFPEGSLGSREAETGDYPKYA 390

Query: 491 SAQLSSNTAACRCGERKQNR 550
           S  +++  +A    ++K  R
Sbjct: 391 SYLMNNEGSASGKSQQKVKR 410


>03_01_0195 -
           1548204-1548257,1548547-1548642,1548726-1548770,
           1549063-1549251,1549512-1549607,1550163-1550216,
           1550566-1550582,1550701-1550797,1551604-1551681,
           1551908-1551976,1552084-1552167,1552282-1552353,
           1552757-1552831,1552915-1552990,1553080-1553141,
           1553231-1553315,1553411-1553475,1554431-1554474,
           1554733-1554988
          Length = 537

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -3

Query: 626 SELYGRLLSRPSF*THSHQSPDRLRFYSASSRHICTLQYWRIIVH 492
           +E++GR+L +    + + ++PD+  F ++ S H   L+   +I H
Sbjct: 67  AEMFGRVLDKEFSDSDTPEAPDKSSFNNSISDHQAVLETVAVITH 111


>02_01_0094 - 667361-668962
          Length = 533

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 377 AETYCGRGSLNVISIQQRLSVGLISSRSSQ*GNFGCQLSAQL 502
           A+  CG     VI    R S+G+IS  +   GNFG  L+  L
Sbjct: 390 AQAACG-AIFGVIPFVSRRSLGIISGMTGAGGNFGAGLTQLL 430


>02_01_0093 + 655420-657021
          Length = 533

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 377 AETYCGRGSLNVISIQQRLSVGLISSRSSQ*GNFGCQLSAQL 502
           A+  CG     VI    R S+G+IS  +   GNFG  L+  L
Sbjct: 390 AQAACG-AIFGVIPFVSRRSLGIISGMTGAGGNFGAGLTQLL 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,934,902
Number of Sequences: 37544
Number of extensions: 358287
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)