Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_N02
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982... 29 2.4
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 29 3.1
03_06_0196 + 32260357-32260785 29 3.1
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 28 4.1
09_04_0229 - 15867333-15868033,15868097-15869249 28 4.1
04_04_0905 - 29290998-29291486 28 5.4
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 27 7.2
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764 27 7.2
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410... 27 7.2
11_06_0512 - 24460391-24462337 27 9.5
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 27 9.5
>05_07_0305 -
29097478-29097598,29097766-29097866,29098136-29098288,
29098404-29098542,29098649-29098719,29099022-29099333,
29099605-29099903,29100011-29100271,29100365-29100471,
29100588-29100739,29100816-29100970,29102946-29103141,
29103340-29103468,29103540-29103641,29103736-29103889,
29103970-29104058
Length = 846
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 448 SDENACTVDVDPNRAPDCDPNQCVLP 525
S EN + VDP+ C P+ C+LP
Sbjct: 248 SRENELPLKVDPSNCKHCTPSYCLLP 273
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 424 GKPDCTDESDENACTV-DVDPN 486
GKPDC E D++ C V D DP+
Sbjct: 72 GKPDCGGEEDDDDCVVLDGDPD 93
>03_06_0196 + 32260357-32260785
Length = 142
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 70 SGESRVKRQEDDGSDDL--TPDQLCEGRPADEYFRLSTEGDCRD 195
SGE + + DD D D +CE P DE F E DC +
Sbjct: 59 SGEEDLDDETDDDIDQCFDEEDGICEENPDDEIFDDDEEIDCEE 102
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 403 EKELFCNGKPDCTDESDENACTVDVDPNRAP 495
+++L C+G D D S+ AC +D N P
Sbjct: 1002 QQKLSCSGDEDTKDSSNSIACEAIIDVNTVP 1032
>09_04_0229 - 15867333-15868033,15868097-15869249
Length = 617
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 131 NCARA-GQQTNISVSAPKAIVEMSSGALGQVLNRSLARLDWHSILINKP 274
+CA + G+ N SVS+PK I+ + +G ++++ R D I+ N P
Sbjct: 109 SCATSIGKAANASVSSPKDIIRTAVDVIGGAVDQAFDRAD--LIMSNDP 155
>04_04_0905 - 29290998-29291486
Length = 162
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 88 KRQEDDGSDDLTPDQLCEGRPADEYFRLS-TEGDCRD 195
+R++ G D L P+ + G P EY +L+ DC D
Sbjct: 56 RRRDPLGDDGLQPEAVKRGLPLVEYMQLADLSADCHD 92
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = -1
Query: 503 SQSGALLGSTSTVQAFSSDSSVQSGLPLQNSSFSMQSPLPQASFPSGQMGSS 348
SQS ++ S S FSS SS +S L Q+ S + S P SF S Q GS+
Sbjct: 744 SQSSSITTSGSVPFQFSSQSSSESSLAGQDKSKAASSSAP-FSF-SPQFGST 793
>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
Length = 515
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +1
Query: 178 EGDCRDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKG 288
E DC DV C R C FD D TC W G
Sbjct: 177 ECDC-DVCCCRRGFCNLCMCVVCNGFDFDVNTCRWIG 212
>09_04_0075 -
14340458-14340551,14340643-14340814,14340895-14341066,
14341617-14341811,14341886-14342053,14342150-14342335,
14342797-14342881,14342896-14343206,14344222-14344569
Length = 576
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 421 NGKPDCTDESDENACTVDVDPNRAPDCDPNQCVL-PDC 531
NG+ + +E D++ VD D RAP+ P Q L DC
Sbjct: 70 NGRHEEEEEEDDDDDEVDNDVRRAPERRPRQVELRRDC 107
>11_06_0512 - 24460391-24462337
Length = 648
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = -3
Query: 345 FQDGQDFSRLLQFVTVVDFTLPVAGLFIKIECQSRRASDLFKT*PSAPDDISTIAFGAET 166
F+ + S L Q ++ D + +F+K+ RR LF DD+ + A
Sbjct: 42 FRGAESSSDLAQLDSIRDMMRELQAIFVKMGENERRIVHLFDPIEELVDDVLN-SLAAGG 100
Query: 165 EIFVCWPALAQL-IRSQIIRPVV 100
EI P LA + ++ IIR +
Sbjct: 101 EISTLQPKLAGVGVQIGIIREAI 123
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 425 PLQNSSFSMQS-PLPQASFPSGQMGSS 348
P QN SM S P P SFP GQ+ S+
Sbjct: 339 PKQNQFNSMPSAPAPMGSFPGGQIPSN 365
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.137 0.441
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281,463
Number of Sequences: 37544
Number of extensions: 295215
Number of successful extensions: 988
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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