Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_N01
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    26   2.7  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    26   3.5  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   3.5  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   3.5  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   6.1  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   8.1  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    25   8.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   8.1  

>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
 Frame = +1

Query: 22  YSHSLPANCFSSDGGRIVLSTPQRNEVRSYVVDVEGGRLVDISIKTNPGSTTVLDVR--S 195
           YS  LP+N        +  S PQ  +++ ++  +   R V +S      S T+  +R   
Sbjct: 327 YSKQLPSNLPQIQACPLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVI 386

Query: 196 DVILATFSNMTTPGGLYVARLPPRGSEAGIK 288
           D  LA      +  GL    + P    A ++
Sbjct: 387 DTGLAKIKQFNSKLGLESLTVQPISQSAAMQ 417


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 73  VLSTPQRNEVRSYVVDVEGGRLVDISIKTNPGSTTVLD 186
           ++STP+ N   S VV  E     D+S K  P  + + D
Sbjct: 481 IMSTPKLNPSESVVVASEKASSPDLSPKLLPSESQIFD 518


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +1

Query: 253 RLPPRGSEAGIKWVRVSTPREVPPSVASSTVEYLDLEHSDSEDAV 387
           R  P G++    + ++S P  VPP       +++  E  D  D +
Sbjct: 136 RSVPNGTQLVKNYNKISKPETVPPDDDPEKPDWIHFEQDDHVDVI 180


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 144 VNQPPSLDIDDITSDFVPLRGR*HYSP 64
           VN  PSLD  +  S+FVP  G   +SP
Sbjct: 23  VNGSPSLDYFETCSNFVPRAGIPTFSP 49


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 333 GYRGGNLPRSGHAHPLDASFRTP 265
           G+ GGN   S    PLD S R+P
Sbjct: 731 GFVGGNQSLSSERIPLDPSMRSP 753


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 253 RLPPRGSEAGIKWVRVSTPREVPPS 327
           ++ P      I   R STPR+VPPS
Sbjct: 432 KVNPEPHSESISDTRPSTPRKVPPS 456


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 52  SSDGGRIVLSTPQRNEVRSYVVDVEGGRLVDISIKTNPGSTTVLDVR 192
           ++ G  I  S+P   E+R  V D+   +L  + ++   G+T  + V+
Sbjct: 276 AAGGSEITKSSPAYKEIRDAVTDI-AQQLAKLVVRDGEGATKFVTVQ 321


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +1

Query: 295 RVSTPREVPPSVASSTVEYLDLEHSDSEDA 384
           +++  +++  ++ASST + L+L+H+  E A
Sbjct: 153 KITIIKDLKDALASSTHQVLELQHTQQEKA 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,963
Number of Sequences: 5004
Number of extensions: 43711
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)