Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M24
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    29   0.40 
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   2.8  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    26   3.8  
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   6.6  

>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 388 RCLEEWFFEFGYVIPNSTNTWQSVIESAPES 480
           R ++ WFFE       ST+T++SV+++A +S
Sbjct: 219 REIQSWFFELHSKFCLSTSTYESVVQAAQDS 249


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 94   ILCNQVVTTILSLYPLFVIYLYKHKMY 14
            ++C     ++L + PLF +YLY    Y
Sbjct: 1038 VICYSAPLSLLLIVPLFFLYLYNRAYY 1064


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 393 AATFEQNFLFQSKSVHRLNGTEIQLTRY 310
           A  +E+NFL     V +LN TE+  T Y
Sbjct: 65  ATPYEENFLRAIAPVKKLNDTELHQTLY 92


>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 144

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 394 LEEWFFEFGYVIPNSTNTWQSVIES 468
           + EWF   G++I  S+ T  SV+ S
Sbjct: 117 VSEWFIHRGFIIDESSKTEDSVLLS 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,029
Number of Sequences: 5004
Number of extensions: 54272
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)