Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M24
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0149 - 20636801-20637044,20637859-20639180                       29   2.9  
04_04_1569 - 34486005-34486303,34486386-34486928,34487382-344877...    29   2.9  
03_03_0162 - 14964106-14964644,14964810-14965020                       29   3.9  
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767           28   6.8  
01_05_0758 + 24954701-24954793,24954907-24955086,24955676-249558...    28   6.8  
02_04_0509 - 23554609-23555241,23555371-23556318                       27   8.9  
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125...    27   8.9  

>11_06_0149 - 20636801-20637044,20637859-20639180
          Length = 521

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 421 YVIPNSTNTWQSVIESAPESQMMPANVL 504
           +V PNST+ W +VI+ A +  M P  V+
Sbjct: 340 HVDPNSTSAWNAVIKGAKKWVMFPPEVV 367


>04_04_1569 -
           34486005-34486303,34486386-34486928,34487382-34487766,
           34488450-34488650,34488739-34488951,34489210-34489446
          Length = 625

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 190 WLNLRDADSGKILWQYNEDMSNP 258
           W+ + D DS  + W+  EDMS P
Sbjct: 148 WVQVGDGDSDHLCWERAEDMSTP 170


>03_03_0162 - 14964106-14964644,14964810-14965020
          Length = 249

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/63 (30%), Positives = 22/63 (34%)
 Frame = +1

Query: 286 KRILKCRVVSRELNFSSIESMDRFRLEQKVLFKGRCLEEWFFEFGYVIPNSTNTWQSVIE 465
           KRI  C    R       +++ RFRLEQ           W  E   V       W  V E
Sbjct: 35  KRIFACGCAGRTEKLRFSQTLSRFRLEQPHATISFVRAHWLGEGSPVHERRQQRWGVVNE 94

Query: 466 SAP 474
            AP
Sbjct: 95  GAP 97


>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
          Length = 1041

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = +1

Query: 109  FIMTEVLPAEEAKQDRVETILKGFQINWLNLRDADSGKILWQYNEDMSNPEVEHEARVPK 288
            F++T     EE K   VET+L+G +      R  +S    WQ    + + +V+H A    
Sbjct: 803  FVLTTNWVPEELKGSNVETLLRGEE------RMLESTSSSWQLELSIGDKQVKHRADWLC 856

Query: 289  RILKCRVVSRELNFSSIESMD 351
              ++   +++EL+ S   S+D
Sbjct: 857  DDVRPAKLAKELSSSHGLSLD 877


>01_05_0758 +
           24954701-24954793,24954907-24955086,24955676-24955870,
           24955982-24956089,24956211-24956288,24956383-24956464,
           24956624-24956783,24956877-24957179,24957295-24957513,
           24957598-24958057,24958175-24958240,24958332-24958511
          Length = 707

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 569 RVKSLSSRSPSKNFVSITTFPLRTLAGIICDSGADSITDCQVL 441
           RVKSLS  S +K  +S+   PLR  +  +  S   S +  +V+
Sbjct: 473 RVKSLSKGSNTKKDLSLAAAPLRESSPSLLASAVPSFSSAEVM 515


>02_04_0509 - 23554609-23555241,23555371-23556318
          Length = 526

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
 Frame = +1

Query: 205 DADSGKILWQYNEDMSNPEVEHEARVPKR--ILKCRVVSRE----LNFSSIESMDRFRLE 366
           D  S  + W  +E M NPE  H+A++  R  +   ++VS +    L +  +   +  RL 
Sbjct: 324 DTSSHMVQWVLSELMRNPEAMHKAQIELRSTLQGKQMVSEDDLASLTYLKLVIKETLRLH 383

Query: 367 QKV-LFKGRCLEEWFFEFGYVIPNSTNTWQSV 459
             V L   R   +     GY +P  T  + +V
Sbjct: 384 PVVPLLLPRECRQTCKVMGYDVPQGTTVFVNV 415


>01_06_1355 + 36610390-36610479,36611906-36612063,36612144-36612523,
            36612600-36613583,36614228-36614292,36614946-36615024,
            36615480-36615529,36616595-36616781,36617922-36617957,
            36619226-36619348,36619466-36620386,36620506-36620636
          Length = 1067

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 363  QSKSVHRLNGTEIQLTRYNSTFQYTLRNPS 274
            Q      + GT+++  +YNST +  L+NP+
Sbjct: 933  QPSGTPMVEGTKVRRLKYNSTVEIVLQNPT 962


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,694,323
Number of Sequences: 37544
Number of extensions: 308250
Number of successful extensions: 708
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)