Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M24
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.4  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    23   3.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   3.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +1

Query: 217 GKILWQYNEDMSNPEVEHEARVPKRILKCRVVSRELNFSSIESMDRFRLE 366
           G  +W+ ++    PE    + VPK +    V SR  + +    +D   L+
Sbjct: 219 GLPMWK-SDTSDGPESHQNSNVPKSVAGLNVSSRRSDMNGTTPLDEKPLD 267


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 409 FEFGYVIPNSTNTWQSVIESAPESQMMPANVLNG 510
           FEFG    N     QS ++  P  ++ P   +NG
Sbjct: 92  FEFGKEYKNGFIKGQSEVQRGPGGRLSPYFGING 125


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 415 FGYVIPNSTNTWQSVIESAPESQMMPA 495
           F  +  N+   W S++  +PE+Q + A
Sbjct: 330 FNLIDQNAVGCWNSLLPYSPENQAVVA 356


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -2

Query: 432 WNYITKFKEPFF*AATFEQNFLFQSKSVHRLNGTEIQLTRYNST 301
           W Y+ K+K     A   E+ F+ +  +    N + ++ T Y  T
Sbjct: 133 WEYLDKYKPTPLGAVATEKMFVARHLAETPKNTSAVRYTHYIGT 176


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 433 NSTN-TWQSVIESAPESQMMPANV 501
           N +N TW   +++ PE  M+P ++
Sbjct: 391 NESNITWPGRLQTKPEGFMIPTHL 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,686
Number of Sequences: 438
Number of extensions: 3312
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)