Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M23
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    30   0.26 
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    28   0.79 
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    28   0.79 
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    26   3.2  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   4.2  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   9.7  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    25   9.7  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +1

Query: 184  GGTAYQHNKVNQWTSAVVESCL--GQLTKLQKPYKYIVTCTIMQKNGAGLHTAS-SC 345
            G  A    K+N  TS+++  C+  G LTK   PY ++ T T+    G+ ++ +  SC
Sbjct: 904  GLDAAMKGKMNGLTSSIINKCIPDGLLTKF--PYNHMQTMTVSGAKGSNVNVSQISC 958


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1088

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 17/80 (21%), Positives = 36/80 (45%)
 Frame = -3

Query: 273  FL*FRQLSQTRFDNSRGPLIYFIVLVSGASN*IFNSLFDYFTHIVYNELIFFCQIVTFFH 94
            FL    L     D  +G +   I L +      +  +FD    + ++ L+     V   +
Sbjct: 843  FLPIDNLLGNNSDLMKGYVTVCIELYTDFYKSAYKEVFDSLQRLQFDALLLIRMEVRLQY 902

Query: 93   LHDLNATISIPSYL*TVKYK 34
            +H +N ++++P Y+  V+Y+
Sbjct: 903  IHSINQSVNLPDYV--VEYR 920


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 85  VMEVKECNDLAEENQFIVDDVSKIIKEAIENSIGGTAYQHNKVNQWTSAV 234
           V+ V +C+ +     FI+ D   + K AI  S G       K+N + S V
Sbjct: 67  VLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSFRSEV 116


>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 71  IVAFKSWR*KNVTIWQKKINSL*TM 145
           I AFK W     T W++K+N +  M
Sbjct: 55  IAAFKFWTSGRTTTWERKMNGMVVM 79


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 127 QFIVDDVSKIIKEAIENSIGGTAYQH 204
           +F   D+S+ +  AI N+IG  AY H
Sbjct: 306 EFAPQDISRSLLLAISNNIGQIAYLH 331


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 340 KTPYEAQHHFFALLCMSLYICKVSV 266
           K P   +HHF  + C++ +I   SV
Sbjct: 276 KYPAFFEHHFLTIFCLNAFIFAYSV 300


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 199 QHNKVNQWTSAVVESCLGQLTKLQKPYK 282
           Q +++    S+ + SC+ Q+ KLQ+  K
Sbjct: 91  QRDEIEHEVSSAISSCIHQIAKLQEIVK 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,319
Number of Sequences: 5004
Number of extensions: 48902
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)