Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M22
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   114   6e-27
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   113   1e-26

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  114 bits (275), Expect = 6e-27
 Identities = 60/115 (52%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
 Frame = +1

Query: 10  KGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR-LLPAKEGKENAKPR 186
           +G Q+IPGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R ++P KEGK   KP 
Sbjct: 116 QGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPY 172

Query: 187 YKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLAQRKKESKVRRQ 351
            KAPKIQRLVTP  LQ                    A++A+L+A+R  E+K +R+
Sbjct: 173 TKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKRE 227


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  113 bits (272), Expect = 1e-26
 Identities = 59/115 (51%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
 Frame = +1

Query: 10  KGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR-LLPAKEGKENAKPR 186
           +G Q+IPGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R ++P KEGK   KP 
Sbjct: 116 QGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPY 172

Query: 187 YKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLAQRKKESKVRRQ 351
            KAPKIQRLVTP  LQ                    A++A+L+A+R  E+K +++
Sbjct: 173 TKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKE 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,491,722
Number of Sequences: 5004
Number of extensions: 24939
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)