Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M19
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50029-1|CAA90340.2|  460|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z81558-1|CAB04539.1|  318|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical...    27   7.1  

>Z50029-1|CAA90340.2|  460|Caenorhabditis elegans Hypothetical
           protein ZC504.1 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 239 YLLSELHCSKDALTSTYGWFMQFLLAVLAFTC 334
           Y +  L C     T   G+F Q+L  + +F+C
Sbjct: 425 YAIRHLQCHPSGSTCPMGYFCQYLFEISSFSC 456


>Z81558-1|CAB04539.1|  318|Caenorhabditis elegans Hypothetical
           protein F59D12.1 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 225 ITALIICCPSFTAPKMLLLQPMAGLC 302
           +T++++CCP   A   ++  P A LC
Sbjct: 142 LTSMLLCCPIIVARMQVVFYPDAQLC 167


>AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical
           protein Y54G11A.15 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 68  LNNIFYYVRVNSYFYCSNKRYITFVIINM 154
           L NI++Y+ +NS FY      I+ ++  +
Sbjct: 259 LPNIYWYISINSEFYSQELNNISIILFTL 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,793,391
Number of Sequences: 27780
Number of extensions: 181814
Number of successful extensions: 531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)