Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M18
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    32   0.040
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    30   0.22 
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    29   0.28 
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    28   0.87 
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   1.1  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   1.5  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    27   1.5  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   2.0  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   4.6  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    25   8.1  
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    25   8.1  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   8.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   8.1  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   8.1  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 32.3 bits (70), Expect = 0.040
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 153 LLKNLKGHPGTVLLVDFSANGKFMAATCDET 245
           L K L GH G V  +D+SA+G+F+ +  D+T
Sbjct: 37  LQKELTGHTGCVNTLDWSADGEFLLSGSDDT 67


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 174 HPGTVLLVDFSANGKFMAATCDE 242
           HP  V  V FS NGK++A  C++
Sbjct: 312 HPSVVCCVKFSNNGKYLATGCNQ 334


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 174 HPGTVLLVDFSANGKFMAATCDETVATV 257
           H GTV  V FS NG+++A+  D+ V  +
Sbjct: 73  HTGTVTSVRFSPNGQYLASGSDDRVVII 100


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 145 TRGFSRISRVIRALFYSSISLLTA 216
           T+GFS+IS V   +F S I+ LTA
Sbjct: 320 TKGFSKISNVFFVIFLSLITSLTA 343


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 90  SGGKNKKRAPWKGKTEFSHPWLLKNLKGHPGTVLLVDFSANGKFM-AATCDETV 248
           SG K++  + W   + F    +L  L GH G+VL +DF      + + + D T+
Sbjct: 236 SGSKDRTVSVWDVNSRF----ILYKLYGHSGSVLCLDFCRRRNLLVSGSSDSTI 285


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 116 CAFLVFTTTTKFGRCVIGSRLINR 45
           C FLV+ TT  FG C++   L N+
Sbjct: 60  CFFLVYRTTYSFGVCLMKRFLFNK 83


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 153 LLKNLKGHPGTVLLVDFSANGKFMAATCD 239
           LL  L+ H   +  V FSA+GKF+A  C+
Sbjct: 280 LLHTLE-HTSVICYVRFSADGKFLATGCN 307



 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 153 LLKNLKGHPGTVLLVDFSANGKFM-AATCDETV 248
           L++ L GH  +V  V FS +GK++ + + D T+
Sbjct: 450 LVEQLHGHEESVYSVAFSPDGKYLVSGSLDNTI 482


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 165 LKGHPGTVLLVDFSANGKFMAA 230
           L  H G VL V++S NG F+A+
Sbjct: 217 LAAHNGVVLCVNYSPNGVFLAS 238


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 21  EKSCEIDAPVDEATTDNAATELRSGGKNKKRAPWK 125
           E+ CE     DE+ + N+ T+  S  K +   PW+
Sbjct: 544 EQGCEPIRKTDESHSPNSKTDNSSTHKQELYGPWR 578


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 150 WLLK-NLKGHPGTVLLVDFSANGKFMAA 230
           W L   L+GH  TV  + FS NG  +A+
Sbjct: 457 WALTCQLQGHTNTVWALAFSPNGNTLAS 484


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 15  NDEKSCEIDAPVDEATTDNAATELRSGGKNK 107
           N+EK  E D  +++A   N   E+    KNK
Sbjct: 88  NEEKLAEFDKAIEDAQELNGEHEILEAMKNK 118


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 141 SHPWLLKNLKGHPGT 185
           +HPW+++N +G P +
Sbjct: 391 NHPWMIRNYEGPPAS 405


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 94  VVKTRNAHLGKERQNLVTRGFSRISRVIRALFYSSISLLTASSWP--LPVMRPSRRWSL 264
           VVK       + R+NL+ +GFS      RA+  + +     S++P  L  +  S+ W L
Sbjct: 91  VVKQMFDESFERRRNLLMKGFSMNHEDFRAMHVNGVQNDLVSTFPNYLISILESKNWQL 149


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 159 KNLKGHPGTVLLVDFSANGKFMAATC--DETVA 251
           +++  H G +  V F+ +  F+ ATC  D+T+A
Sbjct: 275 RSVHAHSGPIHSVAFNPHNDFILATCSTDKTIA 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,689
Number of Sequences: 5004
Number of extensions: 29156
Number of successful extensions: 107
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)