Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M18
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0076 + 25637752-25639062,25639221-25639297,25640962-256410...    34   0.070
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440...    31   0.66 
01_01_0979 + 7743243-7744063,7744141-7744324,7745242-7745425,774...    31   0.66 
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026     30   1.1  
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949...    29   1.5  
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474...    27   6.1  
06_01_0440 + 3127197-3127700,3128299-3128670                           27   6.1  

>02_05_0076 +
           25637752-25639062,25639221-25639297,25640962-25641095,
           25641178-25641242,25641431-25641482,25641912-25641994,
           25642128-25642221,25642332-25642861
          Length = 781

 Score = 33.9 bits (74), Expect = 0.070
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
 Frame = +3

Query: 6   RPINDEKSCEID--APVDEATTDNAATELRSGGKNKKRAPWKGKT--EFSHPWLLKNLKG 173
           R  +DEK    D       + TD++   + + G ++ +    GK+  E S  ++ +++K 
Sbjct: 261 RRSSDEKDTSSDKGGHRSSSATDDSQDGVANHGPDRVKVRQYGKSYKELSGLFMNQDIKA 320

Query: 174 HPGTVLLVDFSANGKFMAATCDETVATV 257
           H G++  + FS +G F+A+  ++ V  V
Sbjct: 321 HSGSIWSIKFSPDGHFLASAGEDCVIHV 348


>11_01_0559 -
           4406815-4406922,4408954-4409042,4409177-4409270,
           4409344-4409481,4409570-4409727,4409826-4409916,
           4410003-4411637
          Length = 770

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
 Frame = +3

Query: 21  EKSCEIDAPVDEATTDNAATELRSGGK-NKKRAPWKGKT--EFSHPWLLKNLKGHPGTVL 191
           E++ +    + ++ + NAAT   S     + +    GKT  E +  +  + ++ H G++ 
Sbjct: 371 EQAHQPGVTMSKSASTNAATMASSSSSLERPKVHSFGKTARELTGMYFRQEVRAHEGSIW 430

Query: 192 LVDFSANGKFMAATCDETVATV 257
            + FS +G+F+A+  ++ V  V
Sbjct: 431 SIKFSPDGRFLASGGEDRVVHV 452


>01_01_0979 +
           7743243-7744063,7744141-7744324,7745242-7745425,
           7746640-7746746
          Length = 431

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 339 PQRISTEELAEALRPHLLSPKRMWALGYPLEIEPSSSKAVVYINPPPRP 485
           P R+S   ++  + P  +SP   W   + + I+PS+   ++   PPP P
Sbjct: 46  PPRVSKLAVSRRITPAKVSPFAKWK-SFVIAIDPSAGLVLLLAPPPPGP 93


>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
          Length = 961

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/65 (20%), Positives = 32/65 (49%)
 Frame = +3

Query: 63  TDNAATELRSGGKNKKRAPWKGKTEFSHPWLLKNLKGHPGTVLLVDFSANGKFMAATCDE 242
           T ++++   S  + K     K   E +  ++ + +  H G++  + FS NG+++A+   +
Sbjct: 134 TSSSSSSASSSERLKAHQSGKSCKELTGLYMCQEIMAHEGSIWSIKFSTNGRWLASAGKD 193

Query: 243 TVATV 257
            V  +
Sbjct: 194 HVVCI 198


>06_03_0673 +
           23394027-23394094,23394267-23394539,23394613-23394958,
           23395031-23395168,23395260-23395385,23395464-23395652,
           23395723-23396202,23396274-23397236
          Length = 860

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 117 PWKGKTEFSHPWLLKNLKGHPG 182
           PW G     HP +++ L GHPG
Sbjct: 261 PWPGNNSRDHPAMIQVLLGHPG 282


>06_03_0541 -
           21944696-21944851,21944939-21945142,21945438-21947472,
           21947644-21947720,21948289-21948477,21949188-21949448,
           21949527-21949632,21951330-21951517,21951814-21951971,
           21952015-21952840,21952947-21953210
          Length = 1487

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 6   RPINDEKSC--EIDAPVDEATTDNAATELRSGGKNKKRAPWKGKTEFSHPWLLKNL 167
           +P+  +K    +ID  V  ATT   A E RSGG   +     GK E     L+ ++
Sbjct: 156 KPLQPKKQTAQKIDTGVVAATTGGTAQEKRSGGIGMQLEVGNGKEELGGAALMSDV 211


>06_01_0440 + 3127197-3127700,3128299-3128670
          Length = 291

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 150 WLLKNLKGHPGTVLLVDFSANGKFMAATCDETVAT 254
           W +  L    G +L++  +ANG+++AAT     AT
Sbjct: 44  WAVHVLHHFDGRMLMLHSAANGRYLAATTSPWAAT 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,775,591
Number of Sequences: 37544
Number of extensions: 232495
Number of successful extensions: 710
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)